RetrogeneDB ID: retro_ogar_169

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873525.1:20898088..20901406(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000010992
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: IPO5
• Ensembl ID: ENSOGAG00000007570
• Aliases: None
• Description: importin 5 [Source:HGNC Symbol;Acc:6402]

Sequence

>retro_ogar_169
ATGGCGGCGGCAGCATCTGCTGGGGTGCCGGCGACCGTGTCGGAAAAGCAAGAGTTTTACCAGCTTCTGAAGAACCTGAT
CAATCCAAGCTGTATGGTGCGCAGGCAAGCAGAGGAAGTCTATGAAAATATCCCAGGTCTGTGTAAGACTACATTCCTCT
TAGATGCCGTCAGAAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCTGCCGCACTGCTACGACGGCTTTTGTCCTCT
GGGTTTGAGGAGGTTTATCCAAATCTGCCTTCTGATATTCAGAGGGATGTCAAGATTGAACTGATACTGGCTGTTAAGTT
AGAAACACACGCTAGCATGAGGAAAAAACTTTGTGATATTTTTGCGGTGCTGGCCAGGAATTTGATAGATGAGGATGGCA
CTAACCACTGGCCAGAAGGTCTGAAGTTTCTTATTGATTCAATCTACTCTAAAAATGTGGTTCTATGGGAAGTTGCACTT
CACGTTTTCTGGCACTTTCCTGGGATTTTTGGGAACCAAGAGCGGCACGATTTGGATATCATCAAACGATTGTTGGACCA
GTGTATTCAAGATCAAGAACATCCAGCAATCAGGACTTTATCCGCTAGAGCTGCAGCTGCATTTGTACTTGCTAATGAGA
ATAATATTGCTCTTTTCAAAGACTTTGCAGACTTACTTCCAGGAATCTTACAGGCTGTGAATGACTCATGCTACCAGGAT
GATGATTCAGTCCTAGAATCCCTTGTTGAGATTGCAGATACAGTACCTAAGTACTTGGGTCCTTATTTAGAAGATACTCT
GCAATTGAGTCTGAAGTTATGTGGAGACTCTAGGCTTAGTAATCTGCAACGCCAGCTGGCTCTTGAAGTAATAGTGACTT
TGTCTGAAACTGCAACTCCAATGTTGAAAAAACATACAAATATTATTGCCCAGGCAATTCCTCATATATTAGCAATGATG
GTTGATCTGCAAGATGATGAGGACTGGGTAAATGCTGATGAAATGGAAGAAGATGATTTTGACAGCAATGCTGTTGCTGC
TGAGAGTGCACTAGACAGACTGGCTTGTGGGCTTGGCGGAAAAGTTGTTTTGCCAATGACCAAAGAACATATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATACCGACATGCTGGATTAATGGCCTTATCTGCTATTGGAGAAGGATGCCATCAGCAA
ATGGAATCAATTCTAGATGAAACAGTTAATTCTGTTTTGCTTTTTCTTCAGGATCCTCATCCAAGGGTAAGGGCTGCAGC
CTGTACTACACTTGGACAGATGGCTACAGATTTTGCACCTAATTTCCAAAAGAAATTCCATGAAACAGTGATTGCAGCTT
TGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCGCACGCAGCTTCTGCTCTTATTACTTTTATTGAAGAC
TGCCCCAAGTCATTGCTAGTTCTATATTTGGATAGTATGGTGAAAAATCTACATTCCATCTTGGTCATAAAACTTCAAGA
GTTAATTCGGAATGGAACTAAGTTGGCCTTGGAACAACTTGTGACAACCATTGCATCAGTTGCAGATACAATAGAAGAAA
AATTTCTTCCATATTATGATATATTTATGCCCTCACTAAAGCACATTGTTGAGCTTGCTGTTCAGAAGGAACTCAAGCTT
CTGAGAGGAAAAACTATTGAGTGCATTAGCCATGTTGGGCTTGCTGTTGGGAAGGAAAAATTTATGGAAGATGCATCAAA
TGTGATGCAGCTATTGTTGAAGACACAATCAGACTTAAACAATATGGAAGATGATGACTCTCAGACATCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGAAAAGATTTTCAACAATATCTTCCACTGGTTATCGAACCTCTTATTAAA
ACTGCTTCTGCTAAACCTGATATTGCTCTCTTAGATACACAAGATGTGGAAAATATGAGTGATGATGATGGCTGGCAATT
TGTAAATCTTGGAGACCAGCAAAGTTTTGGAATTAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGG
TTTACTATGCTAAGGAATTAAGGGAAGGATTTATGGAATATACTGAACAAGTTGTGAAGCTGATGGTTCCTTTACTGAAA
TTTTATTTCCATGATAATGTTCGAGTAGCAGCAGCAGAGTCTATGCCTTTTCTCTTGGAATGTGCAAAAATTCATGGCCC
AGAGTATCTTGGACAAATGTGGCAATTTATATGTGATCCCTTAATCAAGGCTATTGGTACTGAACCAGATACAGATGTAC
TCTCAGAAATAATGAATTCTTTTGCAAAGTCCATTGAAGTAATGGGAGATGGTTGCCTTAATGATGAACACTTGGAAGAA
CTGGGAAGCATATTGAAAGCAAAACTTGAAGGACACTTTAAAAACCAAGAATTGCGACAGGTTAAAAGGCAAGAAGAAAA
CTATGATCAACAGGTTGAGATGTCTCTGCAAGATGAAGATGAATGTGATGTATATATTCTTACCAAAGTATCAGATATTT
TGCACTCATTATTTAGTACTTACAAGGAAAAGATTTTGCCATGGTTTGAACAGCTACTTCCATTAATTGTAAATCTAATT
TGTTCAAGTAGGCCGTGGCCAGACAGACAGTGGGGATTGTGCATATTTGATGACATCATAGAGCACTGCAGTCCAACCTC
ATTTAAATATGTAGAATATTTTCGGTGGCCAATGCTGCTTAATATGCGAGATAACAACCCTGAAGTTAGGCAAGCTGCTG
CTTATGGCCTAGGAGTTATGGCCCAATTTGGTGGAGATGATTATCGTTCTTTATGTTCAGAAGCTGTTCCATTGCTTGTA
AAGGTTATTAAGTGTGCAAATTCCAAAACCAAAAAGAATGTCATTGCTACAGAGAACTGTATCTCAGCAATAGGGAAGAT
TTTGAAGTTCAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACACTGGTTATCATGGCTTCCACTGCATGAAGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGACTTAATTGAAAGTAACCACCCTGTTGTAATTGGTCCAAATAAT
TCTAATCTTCCCAAAATAATCAGCATAATTGCAGAAGGAAAAATTAATGAGACTATTAACTATGAAGCTCCTTGTGCCAA
ACGCTTAGCTAATGTGGTGCGGCAGGTACAGACTTCTGAAGAATTATGGTTGGAATGCATATCCCAGCTTGATGATGAAC
AGCAGAAAGCCTTACAGGAATTGCTAAATTTTGCTTGA

Alignment

ORF - retro_ogar_169 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.8 %
• Parental protein coverage: 54.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKE
          ..GTKL.LEQ.VT.IASVADT.EEKF.PYYD.FMPSLKHIVE.AVQKEL.LLRGKTIECIS..GLAVGKE
Retrocopy RNGTKLALEQLVTTIASVADTIEEKFLPYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHVGLAVGKE

Parental  KFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVA
          KFM.DAS.VMQLLLKTQ.D.N.MEDDD.Q.SYM.SAWARMCKILGK.FQQYLP.V..PL.KTAS.KP..A
Retrocopy KFMEDASNVMQLLLKTQSDLNNMEDDDSQTSYMVSAWARMCKILGKDFQQYLPLVIEPLIKTASAKPDIA

Parental  LLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLL
          LLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EGF.EYTEQVVKLMVPLL
Retrocopy LLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFMEYTEQVVKLMVPLL

Parental  KFYFHDEMKRVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCIE
          KFYFHD....VRVAAAESMP.LLECA...GPEYL.QMW.F.CD.LIKAIGTEPD.DVLSEIM.SFAK.IE
Retrocopy KFYFHDN---VRVAAAESMPFLLECAKIHGPEYLGQMWQFICDPLIKAIGTEPDTDVLSEIMNSFAKSIE

Parental  VMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHS
          VMGDGCLN.EH.EELG.ILKAKLE.HFKNQELRQVKRQ.E.YD.QVE.SLQDED..DVYILTKVSDILHS
Retrocopy VMGDGCLNDEHLEELGSILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDEDECDVYILTKVSDILHS

Parental  IFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDIIEHCSPSSFKYAEYFLRPMLQYVCDNS
          .FS.YKEK.LPWFEQLLPLIVNLIC..RPWPDRQWGLCIFDDIIEHCSP.SFKY.EYF..PML....DN.
Retrocopy LFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNN

Parental  PEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVN
          PEVRQAAAYGLGVMAQ.GGD.YR..C.EA.PLLV.VI..A.SKTK.NV.ATENCISA.GKI.KFKP.CVN
Retrocopy PEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVN

Parental  VEEILPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCA
          V.E.LPHWLSWLPLHEDKEEA.QT.S.LCDLIESNHP.V.GPNN.NLPKI.SIIAEG...E.I..E.PCA
Retrocopy VDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKINETINYEAPCA

Parental  KRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQELLNSA
          KRLANVVRQVQTS..LW.ECI.QL..EQQ.A.QELLN.A
Retrocopy KRLANVVRQVQTSEELWLECISQLDDEQQKALQELLNFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_169 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003784	1 retrocopy	retro_amel_3,
Bos taurus	ENSBTAG00000039374	1 retrocopy	retro_btau_104,
Canis familiaris	ENSCAFG00000005561	1 retrocopy	retro_cfam_452,
Choloepus hoffmanni	ENSCHOG00000006061	1 retrocopy	retro_chof_11,
Cavia porcellus	ENSCPOG00000004827	2 retrocopies	retro_cpor_265, retro_cpor_57,
Equus caballus	ENSECAG00000014808	1 retrocopy	retro_ecab_37,
Felis catus	ENSFCAG00000025657	1 retrocopy	retro_fcat_24,
Homo sapiens	ENSG00000065150	1 retrocopy	retro_hsap_57,
Gorilla gorilla	ENSGGOG00000008742	1 retrocopy	retro_ggor_47,
Loxodonta africana	ENSLAFG00000016190	1 retrocopy	retro_lafr_22,
Myotis lucifugus	ENSMLUG00000006500	1 retrocopy	retro_mluc_295,
Mus musculus	ENSMUSG00000030662	2 retrocopies	retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys	ENSNLEG00000007831	2 retrocopies	retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus	ENSOCUG00000003898	1 retrocopy	retro_ocun_143,
Otolemur garnettii	ENSOGAG00000007570	1 retrocopy	retro_ogar_169 ,
Pongo abelii	ENSPPYG00000005458	1 retrocopy	retro_pabe_172,
Pan troglodytes	ENSPTRG00000005984	2 retrocopies	retro_ptro_49, retro_ptro_745,
Pteropus vampyrus	ENSPVAG00000004516	1 retrocopy	retro_pvam_8,
Rattus norvegicus	ENSRNOG00000010989	1 retrocopy	retro_rnor_240,
Sus scrofa	ENSSSCG00000009509	1 retrocopy	retro_sscr_24,
Ictidomys tridecemlineatus	ENSSTOG00000011164	1 retrocopy	retro_itri_32,