RetrogeneDB ID:

retro_mluc_295

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430300:134420..137738(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000008687
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:IPO5
Ensembl ID:ENSMLUG00000006500
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_295
ATGGCGGCGGCCGCGGCTGCAGGGGTCCCGGCGACCGTGTCGGGGAAGCCCGAGTTCTACCAGCTCCTGAAGAACCTCAT
CAACCCCAGCTGCATGGTGCGGAGGCAGGCCGAGGAGGTCTACGAGAACATCCCGGGGCTGTGCAAGACGACGTGCCTCC
TGGATGCCGTCCGGAACCGGAGGGCAGGTTACGAGGTGAGACAAATGGCTGCCGCGCTGCTCCGGCGGCTTTTGTCCTCG
GGCTTTGAAGAAGTCTATCCCAACTTGCCCGCCGACGTGCAGAGGGACGTCAAGATCGAGCTGATCCTGGCCGTGAAGTT
GGAGACGCATGCCAGTATGCGGAAAAAGCTCTGTGATATCTTTGCCGTGCTGGCGAGGAATCTGATCGATGAGGAGGGCA
CGAACCACTGGCCGGAAGGTCTGAAGTTCCTGATCGATTCGATCTACTCCAAAAATGTGGTTCTGTGGGAGGTGGCGCTT
CACGTTTTCTGGCACTTTCCCGGCATTTTTGGGAACCAAGAGCGGCATGATTTGGATATCATCAAACGGTTGTTGGACCA
GTGTATCCAAGATCAAGAGCATCCGGCCATCAGGACATTATCCGCCAGAGCTGCGGCTACGTTTGTGCTTGCCAATGAGA
ATAACTTCGCCCTTTTCAAAGACTTTGCAGACTTGCTTCCTGGAATCTTACAGGCTGTGAATGACTCTTGCTACCAGGAT
GACGACTCCGTGCTAGAATCCCTTGTCGAGATTGCAGATACTGTGCCTAAATACCTGGGTCCTTACTTAGAAGATACTCT
GCAGTTGAGTCTAAAGTTATGTGGAGACTCTAGGCTTAGTAATCTGCAACGCCAGCTGGCCCTTGAAGTAATAGTGACCT
TGTCTGAAACTGCAACCCCAATGTTGAAGAAATATACAAATATTATTGCACAGGCAATTCCTCATATATTAGGAATGATG
GTTGATCTACAGGATGATGAGGACTGGGTAAATGCCGACGAAATGGAAGAAGATGACTTTGACAGCAATGCAGTCGCTGC
TGAGAGTGCACTAGACAGACTGGCCTGTGGGCTGGGTGGAAAGCTTGTCTTACCAATCACTAAGGAGCATATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATATCGACATGCTGGATTAATGGCCTTATCTGCCATTGGAGAAGGATGCCACCAACAA
ATGGAACCAATTCTAGATGAAATGGTTAACTCTGTTTTGCTTTTTCTTCAGGATCCTCATCCAAGGGTAAGGGCTGCCGC
CTGTATTACGCTTGGACAGATGGCTACAGATTTTGCACCTAATTTCCAAAAGAAATTCCACGAAACAGTGATTGCAGCTC
TGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCACATGCAGCTTCTGCGCTCGTTATTTTTATTGAAGAC
TGCCCCAAATCCTTGCTAGTTATATATTTGGATAGTATGGTGAGAAATCTACATTCCATCTTGGTGATTAAACTTCAAGA
GTTGATTCGGAATGGAACTAAGTTGGCCTTGGAACAGCTTGTGACAACTATTGCCTCAGTTGCAGATACAATAGAAGAAA
AGTTTGTTCCGTATTATGATATATTTATGCCATCACTAAAGCACATTGTTGAGCTTGCTGTTCAAAAGGAACTCAAGCTT
CTGAAAGGAAAAACTATTGAATGCATTAGCCATGTTGGTCTTGCTGTTGGGAAGGAAAAATTTATGCAAGATGCATCAAA
TGTGATGCAGCTATTATTGAAGACACAATCAGATTTAAATAATATGGAAGATGATGACCCTCAGACCTCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGGAGTGATTTTCAACAGTATCTTCCACTGGTTATTGAGCCTCTTATTAAG
ACTGCTTCAGCTAAACCTGATGTTGCTCTCTTAGATACACAAGATGTGGAGAATATGAGTGATGATGATGGCTGGCAATT
TGTAAATCTTGGAGATCAGCAAAGTTTTGGAATTAAAACCTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGG
TTTACTATGCTAAGGAATTAAGGGAAGGACTTGTGGAATATACAGAACAAATTGTAAAGCTGATGGTTCCTTTATTGAAA
TTTTATTTCCATGACAATGTTCGAGTGGCAGCAGCTGAGTCCATGCCATTTCTCCTGGAATGTGCAAGAATTCGTGGCCC
AGAGTATCTTGCACAGATGTGGCAATTCATATGTGATCCCTTAATCAAGGCTATTGGGACTGAACCTGATACAGATGTAC
TCTCAGAAATAATGAGTTCTTTTGCCAAGTCCATTGAAGTAATGGGAGATGGCTGCCTTAATGATGAACACTTAGAAGAA
CTGGGAGAAATATTGAAAGCAAAACTTGAAGGGCACTTTAAAAACCAAGAATTGAGACAGGTTAAAAGACAGGAAGAAAA
CTATGACCAACAGGTTGAAATGTCCTTGCAAGATGAGGATGAATGTGATGTTTACATTTTGACCAAAGTGTCAGATATTT
TGCACTCATTATTTAGTACTTACAAAGAAAAGATTTTGCCATGGTTTGAACAGCTGCTTCCATTAATTGTAAATCTAATT
TGTTCTAGTAGGCCATGGCCAGATAGACAGTGGGGATTGTGCATATTTGATGATATTATAGAGCACTGTAGCCCAACCTC
ATTTAAATATGTAGAATATTTTCGGTGGCCAATGCTACTAAATACACGAGATAATAACCCTGAAGTCAGGCAAGCTGCTG
CTTATGGCCTGGGTGTTATGGCACAGTTTGGTGGAGATGATTATCATTCTTTATGTTCAGAAGCTGTTCCACTGCTGGTA
AAAATCATTAAGTGTGCAAATTCTAAAACCAAAAAAAATGTCATTGCTACAGAGAACTGTATCTCAGCAGTAGGTAAGAT
TTTGAGGTTTAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACACTGGTTGTCATGGCTTCCACTGCATGAGGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGACTTAATTGAAAGTAACCACCCAGCTGTACTCGGTCCAAATAAT
TCCAATCTTCCCAAAATAATCAATATAATTGCAGAAGGAAAAATTAATGAGACTATTAACTATGAAGATCCGTGTGCCAA
ACGCCTAGCTAATGTTGTGCGCCAGGTACAGACTTCTGAAGAATTGTGGTTGGAATGTATATCCCAACTTGATGATGAGC
ATCAGGAAGCCTTACAGGAGTTGCTGAATTTTGCTTGA

ORF - retro_mluc_295 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.01 %
Parental protein coverage: 98.98 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalWFLLLTNLLSFDIVNGKGLEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPT
...LL.NL...........EE.YENIPG..K.T.LL.A.RN..A..E.RQMAA.LLRRLLSS.F.EVYP.
RetrocopyFYQLLKNLINPSCMVRRQAEEVYENIPGLCKTTCLLDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYPN
ParentalLPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNMGLREA
LP.DVQ...K.EL......ET..SMRKK.CDI.A.LARNLIDE.G.N.WPEGLKFL.DS..S.N..L.E.
RetrocopyLPADVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDEEGTNHWPEGLKFLIDSIYSKNVVLWEV
ParentalALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPAIRTLSARATAAFILANEHNVALFKHFADLLPG
ALH.FW.FPGIFGNQ..H.LD.IKR.L.QC.QDQEHPAIRTLSARA.A.F.LANE.N.ALFK.FADLLPG
RetrocopyALHVFWHFPGIFGNQERHDLDIIKRLLDQCIQDQEHPAIRTLSARAAATFVLANENNFALFKDFADLLPG
ParentalFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSETA
.LQAVNDSCYQ.DDSVL.SLVEIADTVPKYL.P.LE.TLQLSLKLCGD..L.N.QRQLALEVIVTLSETA
RetrocopyILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLSNLQRQLALEVIVTLSETA
ParentalAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMACGLGGKLVLPMIK
..ML.K.TNI.AQ.IP..L.MMVDL..DEDW.NADE.E.DDFDSNAVA.ESALDR.ACGLGGKLVLP..K
RetrocopyTPMLKKYTNIIAQAIPHILGMMVDLQDDEDWVNADEMEEDDFDSNAVAAESALDRLACGLGGKLVLPITK
ParentalEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATDF
EHIMQMLQ.PDWKYRHAGLMALSAIGEGCHQQME.IL.E.VN.VLLFLQDPHPRVR.AAC...GQMATDF
RetrocopyEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMEPILDEMVNSVLLFLQDPHPRVRAAACITLGQMATDF
ParentalAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQEL
AP.FQKKFHE.VIAALL.TME.QGNQRVQ.HAA.AL..F.EDCPKSLL..YLD..V..LHSI.V.KLQEL
RetrocopyAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALVIFIEDCPKSLLVIYLDSMVRNLHSILVIKLQEL
ParentalIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGK
I..GTKL.LEQ.VT.IASVADT.EEKFVPYYD.FMPSLKHIVE.AVQKEL.LL.GKTIECIS..GLAVGK
RetrocopyIRNGTKLALEQLVTTIASVADTIEEKFVPYYDIFMPSLKHIVELAVQKELKLLKGKTIECISHVGLAVGK
ParentalEKFMQDASDVMQLLLKTQTDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEV
EKFMQDAS.VMQLLLKTQ.D...MEDDDPQ.SYM.SAWARMCKILG..FQQYLP.V..PL.KTAS.KP.V
RetrocopyEKFMQDASNVMQLLLKTQSDLNNMEDDDPQTSYMVSAWARMCKILGSDFQQYLPLVIEPLIKTASAKPDV
ParentalALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPL
ALLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EG.VEYTEQ.VKLMVPL
RetrocopyALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGLVEYTEQIVKLMVPL
ParentalLKFYFHDEMKRVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCI
LKFYFHD....VRVAAAESMP.LLECAR.RGPEYL.QMW.F.CD.LIKAIGTEPD.DVLSEIM.SFAK.I
RetrocopyLKFYFHD---NVRVAAAESMPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSEIMSSFAKSI
ParentalEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILH
EVMGDGCLN.EH.EELG.ILKAKLE.HFKNQELRQVKRQ.E.YD.QVE.SLQDED..DVYILTKVSDILH
RetrocopyEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDEDECDVYILTKVSDILH
ParentalSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPMLQYVCDS
S.FS.YKEK.LPWFEQLLPLIVNLIC..RPWPDRQWGLCIFDD.IEHCSP.SFKY.EYF..PML....D.
RetrocopySLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNTRDN
ParentalSPEVRQAAAYGLGVMAQYGGDNYHPFCTEALPLLVRVIQSVDSKTKENVNATENCISAVGKIMKFKPDCV
.PEVRQAAAYGLGVMAQ.GGD.YH..C.EA.PLLV..I....SKTK.NV.ATENCISAVGKI..FKP.CV
RetrocopyNPEVRQAAAYGLGVMAQFGGDDYHSLCSEAVPLLVKIIKCANSKTKKNVIATENCISAVGKILRFKPNCV
ParentalNVEEVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPC
NV.EVLPHWLSWLPLHEDKEEA.QT.S.LCDLIESNHP.VLGPNN.NLPKI..IIAEG...E.I..EDPC
RetrocopyNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPAVLGPNNSNLPKIINIIAEGKINETINYEDPC
ParentalAKRLANVVRQVQVS
AKRLANVVRQVQ.S
RetrocopyAKRLANVVRQVQTS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_295 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037841 retrocopy
retro_amel_3,
Bos taurus ENSBTAG000000393741 retrocopy
retro_btau_104,
Canis familiaris ENSCAFG000000055611 retrocopy
retro_cfam_452,
Choloepus hoffmanni ENSCHOG000000060611 retrocopy
retro_chof_11,
Cavia porcellus ENSCPOG000000048272 retrocopies
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG000000148081 retrocopy
retro_ecab_37,
Felis catus ENSFCAG000000256571 retrocopy
retro_fcat_24,
Homo sapiens ENSG000000651501 retrocopy
retro_hsap_57,
Gorilla gorilla ENSGGOG000000087421 retrocopy
retro_ggor_47,
Loxodonta africana ENSLAFG000000161901 retrocopy
retro_lafr_22,
Myotis lucifugus ENSMLUG00000006500 1 retrocopy
retro_mluc_295 ,
Mus musculus ENSMUSG000000306622 retrocopies
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG000000078312 retrocopies
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG000000038981 retrocopy
retro_ocun_143,
Otolemur garnettii ENSOGAG000000075701 retrocopy
retro_ogar_169,
Pongo abelii ENSPPYG000000054581 retrocopy
retro_pabe_172,
Pan troglodytes ENSPTRG000000059842 retrocopies
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG000000045161 retrocopy
retro_pvam_8,
Rattus norvegicus ENSRNOG000000109891 retrocopy
retro_rnor_240,
Sus scrofa ENSSSCG000000095091 retrocopy
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG000000111641 retrocopy
retro_itri_32,


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