RetrogeneDB ID:

retro_amel_3

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL194955.1:60273..63591(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSAMEG00000019264
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:IPO5
Ensembl ID:ENSAMEG00000003784
Aliases:None
Description:importin 5 [Source:HGNC Symbol;Acc:6402]


Retrocopy-Parental alignment summary:






>retro_amel_3
ATGGCGGCGGCCGGGTCTGCAGGGGTACCGGCCGCCGTGTCGGGAAAGCAAGAGTTTTACCAGCTTCTGAAGAACCTGAT
CAATCCAAGCTGTATGGTGCGGAGACAGGCAGAGGAAATCTATGAAAATATCCCAGGTCTGTGTAAGACTACATTCCTCT
TAGATGCTGTCAGGAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCTGCCGCACTGCTACGACGGCTTTTGTCCTCT
GGGTTTGAGGAAGTCTATCCAAATCTGCCTTCTGATGTTCAGAGGGACGTCAAGATTGAACTGATACTGGCTGTTAAGTT
AGAAACACATGCTAGCATGAGGAAAAAACTTTGTGATATTTTTGCAGTGCTGGCCAGGAATCTGATAGATGAGGATGGCA
CTAACCACTGGCCCGAAGGTTTGAAGTTCCTTATTGATTCAATCTACTCTAAAAATGTAGTTTTATGGGAAGTCGCACTT
CATGTTTTCTGGCACTTTCCTGGGATTTTTGGGAACCAAGAGCGGCATGATTTGGATATCATCAAACGGTTGTTGGACCA
GTGCATTCAAGATCAAGAGCATCCAGCAATCAGGACATTGTCTGCTAGAGCTGCAGCTGCATTTGTACTTGCTAATGAGA
ATAATATTGCTCTTTTCAAAGACTTTGCAGACTTGCTTCCTGGAATCTTACAGGCTGTGAATGACTCATGTTACCAGGAT
GATGATTCAGTGCTAGAATCCCTTGTTGAGATTGCAGATACTGTACCTAAATACCTGGGTCCTTATTTAGAAGATACTCT
GCAGTTGAGTCTGAAGTTATGTGGAGACTCTAGACTTAGTAATCTGCAGCGCCAGCTGGCCCTTGAAATAATAGTGACCT
TGTCTGAAACTGCAACCCCAATGTTGAAAAAACATACAAATATAATTGCACAGGCAGTTCCTCATATATTAGCAATGATG
GTTGATCTACAAGATGATGAGGACTGGGTAAATGCTGATGAAATGGAAGAAGATGATTTTGACAGCAATGCAGTTGCTGC
TGAGAGTGCACTAGACAGGCTGGCTTGTGGGCTCGGTGGAAAACTTGTTTTACCAATGACTAAGGAGCACATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATATCGACATGCTGGATTAATGGCCTTATCTGCCATTGGAGAAGGATGCCATCAGCAA
ATGGAATCAATTCTAGATGAAACAGTTAACTCTGTTTTGCTTTTTCTTCAGGATCCTCACCCAAGAGTGAGGGCTGCAGC
CTGTACTACACTTGGACAGATGGCTACAGATTTTGCACCTAACTTCCAAAAGAAATTCCATGAAACAGTGATTGCAGCTC
TGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCACATGCAGCTTCAGCACTTATTATTTTTATTGAAGAC
TGCCCCAAAGCATTGCTAGTTCTATATTTGGATAGTATGGTGAGAAATCTACATTCCATCTTGGTGATTAAACTTCAAGA
GTTGATTCGAAATGGAACTAAATTGGCCTTGGAACAGCTTGTGACAACCATTGCCTCAGTTGCAGATACAATAGAAGAAA
AATTTCTTCCATATTATGATATATTTATGCCATCACTAAAGCACATTGTTGAACTTGCTGTTCAAAAGGAGCTCAAGCTT
CTGAAAGGAAAAACTATTGAATGCATTAGCCATGTCGGTCTTGCTGTTGGGAAGGAAAAATTTATGCAAGATTCATCAAA
TGTTATGCAGCTGTTGTTGAAGACACAATCAGACTTAAGTAATATGGAAGATGATGACCCTCAGACATCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGAAATGATTTTCAACAATACCTTCCACTAGTTATTGAGCCTCTTATTAAG
ACTGCTTCAGCTAAACCTGATGTTGCGCTCTTAGACACACAAGATGTGGAAAATATGAGTGATGATGATGGATGGCAATT
TGTAAATCTTGGAGACCAGCAAAGTTTTGGAATTAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGG
TTTACTATGCTAAGGAGTTAAGGGAAGGATTTGTGGAATATACAGAACAAGTTGTAAAGCTTATGGTTCCTTTATTGAAA
TTTTATTTCCATGACAATGTTCGAGTGGCAGCAGCAGAGTCAATGCCTTTTCTCCTGGAATGTGCAAGAATTCATGGCCC
AGAGTATCTTGCACAGATGTGGCAATTCATATGTGATCCCTTAATCAAGGCTATTGGGACTGAACCTGATACAGATGTAC
TCTCAGAAATAATGAATTCTTTTGCAAAGTCCATTGAAGTAATGGGAGATGGGTGCCTTAATGATGAACACTTGGAAGAA
CTAGGAGAAATATTGAAAGCAAAACTTGAGGGGCACTTTAAAAACCAAGAATTGAGACAGGTTAAAAGACAGGAAGAAAA
CTATGACCAACAGGTTGAAATGTCTCTCCAAGATGAGGATGAATGTGATGTTTATATTCTGACCAAAGTATCAGATATTT
TGCACTCATTATTTAGTACTTATAAGGAAAAGATTTTACCGTGGTTTGAACAGCTGCTTCCATTAATTGTAAATCTGATT
TGTTCAAGTAGGCCATGGCCAGACAGGCAGTGGGGATTGTGCATTTTTGATGATATTATAGAGCACTGCAGTCCAACCTC
CTTTAAATACGTAGAATATTTTCGGTGGCCAATGCTACTAAATATGCGAGACAATAACCCTGAAGTCAGGCAAGCTGCCG
CTTATGGCCTGGGTGTTATGGCACAGTTTGGTGGAGATGATTATCGTTCTTTATGTTCAGAAGCTGTTCCACTGCTGGTA
AAAGTTATTAAGTGTGCAAATTCCAAAACAAAAAAAAATGTCATTGCTACAGAGAACTGTATCTCAGCAGTTGGGAAGAT
TTTGAGGTTTAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACACTGGTTATCATGGCTTCCACTGCATGAGGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGACTTAATCGAAAGTAACCATCCAGTTGTACTTGGTCCAAATAAT
TCCAATCTTCCCCAAATAATCAGTATAATTGCAGAAGGAAAAATTAATGAGACTGTTAACTATGGAGATCCTTGTGCCAA
ACGCCTAGCTAATGTTGTGCGTCAGGTACAGACTTCTGAAGAATTATGGTTGGAATGCATATCCCAACTTGATGATGTGC
AGCAGGAAGCTTTACAGGGGTTGCTAAATTTTGCTTGA

ORF - retro_amel_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.55 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalVIGVVALRRQDFLLLTNLLS-FYIIHGEAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRRLL
V...V........LL.NL..........AEE.YENIPG..K.TFLL.A.RN..A..E.RQMAA.LLRRLL
RetrocopyVPAAVSGKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAAALLRRLL
ParentalSSAFDEVYPTLPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDEDGNNQWPEGLKFLFDSV
SS.F.EVYP.LPSDVQ...K.EL......ET..SMRKK.CDI.A.LARNLIDEDG.N.WPEGLKFL.DS.
RetrocopySSGFEEVYPNLPSDVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSI
ParentalSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNVAL
.S.N..L.E.ALH.FW.FPGIFGNQ..H.LD.IKR.L.QC.QDQEHP.IRTLSARA.AAF.LANE.N.AL
RetrocopyYSKNVVLWEVALHVFWHFPGIFGNQERHDLDIIKRLLDQCIQDQEHPAIRTLSARAAAAFVLANENNIAL
ParentalFKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLAL
FK.FADLLPG.LQAVNDSCYQ.DDSVL.SLVEIADTVPKYL.P.LE.TLQLSLKLCGD..L.N.QRQLAL
RetrocopyFKDFADLLPGILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLSNLQRQLAL
ParentalEVIVTLSETAAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMACGL
E.IVTLSETA..ML.KHTNI.AQ..P..LAMMVDL..DEDW.NADE.E.DDFDSNAVA.ESALDR.ACGL
RetrocopyEIIVTLSETATPMLKKHTNIIAQAVPHILAMMVDLQDDEDWVNADEMEEDDFDSNAVAAESALDRLACGL
ParentalGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAAC
GGKLVLPM.KEHIMQMLQ.PDWKYRHAGLMALSAIGEGCHQQME.IL.E.VN.VLLFLQDPHPRVR.AAC
RetrocopyGGKLVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFLQDPHPRVRAAAC
ParentalNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLH
...GQMATDFAP.FQKKFHE.VIAALL.TME.QGNQRVQ.HAA.ALI.F.EDCPK.LL..YLD..V..LH
RetrocopyTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALIIFIEDCPKALLVLYLDSMVRNLH
ParentalSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIEC
SI.V.KLQELI..GTKL.LEQ.VT.IASVADT.EEKF.PYYD.FMPSLKHIVE.AVQKEL.LL.GKTIEC
RetrocopySILVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFLPYYDIFMPSLKHIVELAVQKELKLLKGKTIEC
ParentalISLIGLAVGKEKFMQDASDVMQLLLKTQTDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPL
IS..GLAVGKEKFMQD.S.VMQLLLKTQ.D.S.MEDDDPQ.SYM.SAWARMCKILG..FQQYLP.V..PL
RetrocopyISHVGLAVGKEKFMQDSSNVMQLLLKTQSDLSNMEDDDPQTSYMVSAWARMCKILGNDFQQYLPLVIEPL
ParentalMKTASIKPEVALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYT
.KTAS.KP.VALLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EGFVEYT
RetrocopyIKTASAKPDVALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVEYT
ParentalEQVVKLMVPLLKFYFHDEIKRVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLS
EQVVKLMVPLLKFYFHD....VRVAAAESMP.LLECAR..GPEYL.QMW.F.CD.LIKAIGTEPD.DVLS
RetrocopyEQVVKLMVPLLKFYFHD---NVRVAAAESMPFLLECARIHGPEYLAQMWQFICDPLIKAIGTEPDTDVLS
ParentalEIMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVY
EIM.SFAK.IEVMGDGCLN.EH.EELG.ILKAKLE.HFKNQELRQVKRQ.E.YD.QVE.SLQDED..DVY
RetrocopyEIMNSFAKSIEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDEDECDVY
ParentalILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFL
ILTKVSDILHS.FS.YKEK.LPWFEQLLPLIVNLIC..RPWPDRQWGLCIFDD.IEHCSP.SFKY.EYF.
RetrocopyILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFR
ParentalRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVG
.PML....DN.PEVRQAAAYGLGVMAQ.GGD.YR..C.EA.PLLV.VI..A.SKTK.NV.ATENCISAVG
RetrocopyWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAVG
ParentalKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEM
KI..FKP.CVNV.EVLPHWLSWLPLHEDKEEA.QT...LCDLIESNHP.VLGPNN.NLP.I.SIIAEG..
RetrocopyKILRFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVLGPNNSNLPQIISIIAEGKI
ParentalHEAIKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQELLNSA
.E.....DPCAKRLANVVRQVQTS..LW.ECI.QL...QQ.A.Q.LLN.A
RetrocopyNETVNYGDPCAKRLANVVRQVQTSEELWLECISQLDDVQQEALQGLLNFA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_amel_3 retrocopy.

TSS - click to see more details

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab - click to see more details

retro_amel_3 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG00000003784 1 retrocopy
retro_amel_3 ,
Bos taurus ENSBTAG000000393741 retrocopy
retro_btau_104,
Canis familiaris ENSCAFG000000055611 retrocopy
retro_cfam_452,
Choloepus hoffmanni ENSCHOG000000060611 retrocopy
retro_chof_11,
Cavia porcellus ENSCPOG000000048272 retrocopies
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG000000148081 retrocopy
retro_ecab_37,
Felis catus ENSFCAG000000256571 retrocopy
retro_fcat_24,
Homo sapiens ENSG000000651501 retrocopy
retro_hsap_57,
Gorilla gorilla ENSGGOG000000087421 retrocopy
retro_ggor_47,
Loxodonta africana ENSLAFG000000161901 retrocopy
retro_lafr_22,
Myotis lucifugus ENSMLUG000000065001 retrocopy
retro_mluc_295,
Mus musculus ENSMUSG000000306622 retrocopies
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG000000078312 retrocopies
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG000000038981 retrocopy
retro_ocun_143,
Otolemur garnettii ENSOGAG000000075701 retrocopy
retro_ogar_169,
Pongo abelii ENSPPYG000000054581 retrocopy
retro_pabe_172,
Pan troglodytes ENSPTRG000000059842 retrocopies
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG000000045161 retrocopy
retro_pvam_8,
Rattus norvegicus ENSRNOG000000109891 retrocopy
retro_rnor_240,
Sus scrofa ENSSSCG000000095091 retrocopy
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG000000111641 retrocopy
retro_itri_32,


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