Parental gene:

IPO5, ENSSSCG00000009509

Aliases:None
Description:importin 5 [Source:HGNC Symbol;Acc:6402]
Organism:Pig (Sus scrofa)
Coordinates:11:74138128..74174551(+)


>ENSSSCG00000009509
GAAACCTACGAGAACATCCCAGGCCAGTCGAAGATCACATTCCTCTTACAGGCCATCCGAAATACAACAGCTGCTGAGGA
GGCTAGACAAATGGCTGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCGTTTGATGAAGTCTATCCAACTCTTCCCACTG
ATGTTCAGACTGCCATCAAGAGTGAGCTACTAATGATTATTCAAATGGAAACACAGTCTAGCATGAGGAAAAAAATTTGT
GATATTGCGGCAGAGTTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAATGGCCTGAAGGTTTGAAGTTCCTTTT
TGATTCAGTCAGCTCTCAAAACATGGGACTGCGGGAAGCTGCCCTTCATATTTTCTGGAACTTTCCTGGAATTTTTGGGA
ATCAACAGCAGCACTACTTAGACGTCATCAAACGGATGTTAGTTCAATGTATGCAAGATCAGGAACATCCTTCGATCAGG
ACATTATCTGCTAGAGCTACTGCTGCATTTATACTTGCAAACGAGCATAATGTTGCTCTGTTCAAACATTTTGCAGACTT
GTTACCTGGATTCTTACAGGCTGTAAATGACTCATGCTACCAGAATGATGATTCAGTCCTAAAATCCCTTGTTGAGATTG
CAGACACTGTTCCAAAGTATTTGCGTCCTCATTTGGAAGCTACTTTACAGCTAAGTCTGAAGTTGTGTGGCGACACTAGC
CTCAATAATATGCAGCGCCAGCTTGCCCTTGAAGTAATTGTGACCCTGTCTGAGACTGCGGCTGCTATGTTAAGAAAACA
CACCAGTATTGTTGCACAAACTATTCCTCAGATGTTAGCAATGATGGTTGACCTTGAAGAGGATGAGGACTGGGCAAATG
CAGACGAACTAGAAGACGACGATTTTGACAGCAATGCGGTTGCTGGTGAGAGTGCGCTGGACAGAATGGCTTGTGGACTC
GGTGGAAAGCTTGTCCTGCCGATGATCAAGGAACACATCATGCAGATGCTTCAGAATCCTGACTGGAAGTATCGCCATGC
AGGATTGATGGCCTTATCCGCCATTGGCGAGGGCTGCCACCAGCAAATGGAAGGGATTCTGAATGAGATAGTCAATTTTG
TTTTGCTCTTTCTTCAGGATCCTCACCCCAGAGTGAGGTATGCAGCCTGCAATGCCGTGGGACAGATGGCTACAGATTTT
GCACCTGGTTTCCAAAAGAAATTCCACGAGAAGGTGATTGCAGCACTGCTGCAGACCATGGAAGACCAAGGCAACCAGCG
GGTGCAGGCCCACGCAGCCGCTGCTCTCATTAACTTCACTGAGGACTGTCCCAAGTCGCTACTTATTCCCTATTTAGATA
ATTTGGTGAAACATCTGCATTCCATCATGGTGCTTAAACTTCAAGAGTTGATTCAGAAAGGCACCAAATTGGTTTTGGAA
CAAGTTGTGACGTCTATCGCATCAGTTGCAGATACTGCAGAAGAAAAATTTGTCCCCTACTATGACTTATTTATGCCGTC
ACTGAAGCACATTGTTGAGAATGCAGTTCAAAAGGAACTCCGGCTTCTCAGAGGGAAAACTATTGAATGCATCAGCCTCA
TTGGTCTGGCTGTTGGGAAGGAGAAATTCATGCAAGATGCATCAGATGTGATGCAGCTCCTACTGAAGACCCAGACGGAC
TTCAGTGACATGGAAGACGACGACCCTCAGATCTCTTATATGATCTCAGCATGGGCCAGAATGTGCAAAATCCTTGGAAA
GGAATTTCAGCAGTACCTTCCAGTGGTCATGGGGCCTTTAATGAAGACAGCTTCAATTAAGCCTGAAGTAGCCCTTTTAG
ATACCCAAGACATGGAAAACATGAGTGATGATGATGGTTGGGAATTTGTGAACCTTGGAGATCAGCAGAGTTTTGGTATT
AAAACTGCAGGACTTGAAGAAAAGTCAACTGCTTGCCAGATGCTGGTTTGCTATGCTAAGGAGTTAAAAGAAGGCTTTGT
GGAGTACACTGAACAGGTTGTCAAACTCATGGTCCCTCTACTGAAATTTTATTTCCACGATGGTGTTCGAGTGGCAGCCG
CAGAATCCATGCCTCTTCTCCTGGAATGTGCAAGAGTCCGTGGTCCTGAGTATCTCACACAGATGTGGCATTTCATGTGT
GATGCTCTAATCAAGGCCATTGGCACAGAACCAGATTCAGATGTCCTCTCAGAAATAATGCATTCCTTTGCAAAGTGCAT
TGAAGTCATGGGAGACGGTTGCCTTAATAATGAACACTTTGAAGAGTTGGGAGGTATATTGAAAGCTAAACTAGAAGAAC
ATTTCAAAAATCAAGAATTGCGGCAAGTTAAAAGACAAGATGAAGACTATGATGAACAGGTGGAAGAATCACTACAAGAT
GAGGATGATAATGATGTTTATATTCTGACCAAAGTGTCAGACATTTTACACTCAATATTCAGTAGCTACAAGGAAAAAGT
GTTACCATGGTTTGAACAGCTGCTTCCGTTAATCGTCAACCTAATTTGTCCACACAGACCATGGCCAGACCGACAGTGGG
GATTGTGCATCTTCGATGATGTCGTAGAACACTGTAGTCCAGCCTCGTTTAAATACGCAGAGTATTTCTTAAGGCCGATG
CTGCAGTACGTGTGTGACAGCAGCCCAGAAGTCAGGCAGGCGGCTGCGTATGGCCTCGGCGTCATGGCACAGTATGGCGG
AGACAACTACCGTCCTTTCTGCACAGAAGCCCTTCCGCTGCTGGTAAGAGTTATTCAGTCTGCTGATTCTAAGACCAAAG
AAAATGTCAACGCTACAGAGAACTGCATCTCGGCAGTGGGGAAGATTATGAAGTTCAAGCCTGACTGTGTGAACGTGGAA
GAAGTCCTGCCACATTGGCTGTCTTGGCTTCCACTACATGAGGATAAAGAAGAAGCTGTTCAGACTTTCAACTATTTGTG
TGACCTGATTGAAAGTAATCACCCGATTGTTCTTGGCCCAAACAATACCAATCTGCCCAAAATATTCAGCATAATTGCAG
AAGGAGAGATGCATGAGGCAATTAAACATGAAGATCCTTGTGCCAAACGTCTGGCTAATGTAGTTCGCCAGGTACAGACG
TCTGGAGGCCTGTGGACTGAATGCATAGCACAGCTCAGCCCTGAGCAGCAGGCGGCCATACAGGAGCTCCTGAACTCTGC
TTGA

Library Parental gene expression (RPM)
SRP014902_placenta 212 .77 RPM
SRP014902_testis 195 .20 RPM
SRP018288_heart 159 .49 RPM
SRP018288_kidney 104 .42 RPM
SRP018288_liver 79 .95 RPM
SRP018288_lung 139 .09 RPM
SRP018856_adipose 234 .45 RPM
SRP035408_brain 178 .08 RPM
SRP035408_liver 70 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003784 ortholog_one2one 1 retrogene
retro_amel_3,
Bos taurus ENSBTAG00000039374 ortholog_one2one 1 retrogene
retro_btau_104,
Canis familiaris ENSCAFG00000005561 ortholog_one2one 1 retrogene
retro_cfam_452,
Choloepus hoffmanni ENSCHOG00000006061 ortholog_one2many 1 retrogene
retro_chof_11,
Cavia porcellus ENSCPOG00000004827 ortholog_one2one 2 retrogenes
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG00000014808 ortholog_one2one 1 retrogene
retro_ecab_37,
Felis catus ENSFCAG00000025657 ortholog_one2one 1 retrogene
retro_fcat_24,
Homo sapiens ENSG00000065150 ortholog_one2one 1 retrogene
retro_hsap_57,
Gorilla gorilla ENSGGOG00000008742 ortholog_one2one 1 retrogene
retro_ggor_47,
Loxodonta africana ENSLAFG00000016190 ortholog_one2one 1 retrogene
retro_lafr_22,
Myotis lucifugus ENSMLUG00000006500 ortholog_one2one 1 retrogene
retro_mluc_295,
Mus musculus ENSMUSG00000030662 ortholog_one2one 2 retrogenes
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG00000007831 ortholog_one2one 2 retrogenes
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG00000003898 ortholog_one2one 1 retrogene
retro_ocun_143,
Otolemur garnettii ENSOGAG00000007570 ortholog_one2one 1 retrogene
retro_ogar_169,
Pongo abelii ENSPPYG00000005458 ortholog_one2one 1 retrogene
retro_pabe_172,
Pan troglodytes ENSPTRG00000005984 ortholog_one2one 2 retrogenes
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG00000004516 ortholog_one2one 1 retrogene
retro_pvam_8,
Rattus norvegicus ENSRNOG00000010989 ortholog_one2one 1 retrogene
retro_rnor_240,
Ictidomys tridecemlineatus ENSSTOG00000011164 ortholog_one2one 1 retrogene
retro_itri_32,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_24 79.29 100.00
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Download FASTA sequences of all ENSSSCG00000009509 retrocopies