RetrogeneDB ID: | retro_hsap_952 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:6994065..6994518(+) | ||
Located in intron of: | ENSG00000010626 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248593 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DSTN | ||
Ensembl ID: | ENSG00000125868 | ||
Aliases: | DSTN, ACTDP, ADF, HEL32, bA462D18.2 | ||
Description: | destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750] |
Percent Identity: | 87.18 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVI-FCLSADKKCII-VEEGKEILVGDVGVTITDPFK |
ASGVQVADEVCRIFYDM.VRKCSTPEEIKKR.KAVI.FCLSADKKCI..VE.GKEILVGDVGVTI..PFK | |
Retrocopy | ASGVQVADEVCRIFYDMRVRKCSTPEEIKKRTKAVI>FCLSADKKCIM<VE-GKEILVGDVGVTISEPFK |
Parental | HFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANG |
HFVGMLPEKDC.YALYDASFETKESR......FLWA.ELAPLKSKMIY.SSKDAIKKKFQGIKHE.Q.NG | |
Retrocopy | HFVGMLPEKDCCYALYDASFETKESRRIDV--FLWASELAPLKSKMIYTSSKDAIKKKFQGIKHEWQTNG |
Parental | PEDLNRACIAEKLGGS |
PEDLNRAC.AEKLGGS | |
Retrocopy | PEDLNRACTAEKLGGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 2 .03 RPM | 338 .72 RPM |
bodymap2_adrenal | 2 .27 RPM | 690 .05 RPM |
bodymap2_brain | 3 .12 RPM | 382 .89 RPM |
bodymap2_breast | 1 .58 RPM | 437 .11 RPM |
bodymap2_colon | 2 .22 RPM | 1909 .61 RPM |
bodymap2_heart | 1 .07 RPM | 588 .65 RPM |
bodymap2_kidney | 5 .52 RPM | 582 .36 RPM |
bodymap2_liver | 0 .66 RPM | 131 .90 RPM |
bodymap2_lung | 1 .74 RPM | 798 .75 RPM |
bodymap2_lymph_node | 1 .81 RPM | 417 .32 RPM |
bodymap2_ovary | 4 .32 RPM | 552 .15 RPM |
bodymap2_prostate | 3 .59 RPM | 2201 .33 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 140 .65 RPM |
bodymap2_testis | 4 .20 RPM | 847 .94 RPM |
bodymap2_thyroid | 3 .09 RPM | 627 .98 RPM |
bodymap2_white_blood_cells | 3 .45 RPM | 82 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_659 |
Pongo abelii | retro_pabe_812 |
Macaca mulatta | retro_mmul_782 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 2 .57 RPM |
CEU_NA11843 | 1 .96 RPM |
CEU_NA11930 | 2 .51 RPM |
CEU_NA12004 | 3 .11 RPM |
CEU_NA12400 | 2 .74 RPM |
CEU_NA12751 | 2 .53 RPM |
CEU_NA12760 | 1 .75 RPM |
CEU_NA12827 | 2 .78 RPM |
CEU_NA12872 | 2 .59 RPM |
CEU_NA12873 | 1 .98 RPM |
FIN_HG00183 | 2 .31 RPM |
FIN_HG00277 | 2 .26 RPM |
FIN_HG00315 | 2 .87 RPM |
FIN_HG00321 | 2 .90 RPM |
FIN_HG00328 | 2 .65 RPM |
FIN_HG00338 | 2 .32 RPM |
FIN_HG00349 | 2 .19 RPM |
FIN_HG00375 | 3 .13 RPM |
FIN_HG00377 | 2 .27 RPM |
FIN_HG00378 | 2 .46 RPM |
GBR_HG00099 | 2 .24 RPM |
GBR_HG00111 | 2 .94 RPM |
GBR_HG00114 | 3 .34 RPM |
GBR_HG00119 | 1 .99 RPM |
GBR_HG00131 | 2 .44 RPM |
GBR_HG00133 | 2 .85 RPM |
GBR_HG00134 | 2 .49 RPM |
GBR_HG00137 | 2 .01 RPM |
GBR_HG00142 | 2 .25 RPM |
GBR_HG00143 | 2 .55 RPM |
TSI_NA20512 | 2 .68 RPM |
TSI_NA20513 | 2 .49 RPM |
TSI_NA20518 | 2 .94 RPM |
TSI_NA20532 | 3 .50 RPM |
TSI_NA20538 | 2 .12 RPM |
TSI_NA20756 | 2 .82 RPM |
TSI_NA20765 | 2 .18 RPM |
TSI_NA20771 | 1 .90 RPM |
TSI_NA20786 | 2 .43 RPM |
TSI_NA20798 | 3 .55 RPM |
YRI_NA18870 | 3 .08 RPM |
YRI_NA18907 | 2 .05 RPM |
YRI_NA18916 | 1 .62 RPM |
YRI_NA19093 | 2 .50 RPM |
YRI_NA19099 | 2 .80 RPM |
YRI_NA19114 | 2 .28 RPM |
YRI_NA19118 | 2 .03 RPM |
YRI_NA19213 | 2 .70 RPM |
YRI_NA19214 | 3 .03 RPM |
YRI_NA19223 | 3 .30 RPM |