RetrogeneDB ID:

retro_tbel_2880

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_12215:0..338(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTBEG00000007144
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:DSTN
Ensembl ID:ENSTBEG00000017634
Aliases:None
Description:destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750]


Retrocopy-Parental alignment summary:






>retro_tbel_2880
GAAGGCAAGGAGATCTTGGTAGTAGACGATGCTGTAATCATCACTGATCCATTCAAGCATTTTGTGGGAATGCTTCCTGA
AAAAGATTGCCGCTACGCTTTGTATGATGCAAGCTTTGAAACTAAGGAATCCAGAAAAGAATTGATTTTTTTTTGTGGGC
ACCAGAACTAGCACCTCTGAAAAGTAAAATGATCTACGCAAGCTCTAAGGATGCAATCAAAAAGAAATTTCAAGGCATAA
AACATGAATGTCAAGCCAATGGGCCAGAAGACCTCAATCGGGCGTGTATCGCTGAGAAGCTAGGTCGATCCCTAATTGTA
GCTTTTGAAGGATGCCCG

ORF - retro_tbel_2880 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.7 %
Parental protein coverage: 69.51 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL-WAPELAPLKSKMIYAS
EGKEILV.D..V.ITDPFKHFVGMLPEKDCRYALYDASFETKES...EL.....WAPELAPLKSKMIYAS
RetrocopyEGKEILVVDDAVIITDPFKHFVGMLPEKDCRYALYDASFETKES-RKELXXXX<WAPELAPLKSKMIYAS
ParentalSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCP
SKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG.SLIVAFEGCP
RetrocopySKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGRSLIVAFEGCP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_2880 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_2880 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000154341 retrocopy
Choloepus hoffmanni ENSCHOG000000031105 retrocopies
Cavia porcellus ENSCPOG000000055732 retrocopies
Dasypus novemcinctus ENSDNOG000000009341 retrocopy
Erinaceus europaeus ENSEEUG000000118931 retrocopy
Homo sapiens ENSG000001258681 retrocopy
Gorilla gorilla ENSGGOG000000090071 retrocopy
Microcebus murinus ENSMICG000000136871 retrocopy
Macaca mulatta ENSMMUG000000137861 retrocopy
Mus musculus ENSMUSG000000159321 retrocopy
Nomascus leucogenys ENSNLEG000000096791 retrocopy
Oryctolagus cuniculus ENSOCUG000000274561 retrocopy
Ochotona princeps ENSOPRG000000009762 retrocopies
Pongo abelii ENSPPYG000000107271 retrocopy
Pan troglodytes ENSPTRG000000132751 retrocopy
Pteropus vampyrus ENSPVAG000000004201 retrocopy
Rattus norvegicus ENSRNOG000000059241 retrocopy
Sus scrofa ENSSSCG000000070851 retrocopy
Tupaia belangeri ENSTBEG000000003912 retrocopies
Tupaia belangeri ENSTBEG000000167512 retrocopies
Tupaia belangeri ENSTBEG00000017634 8 retrocopies
Tursiops truncatus ENSTTRG000000072911 retrocopy



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