RetrogeneDB ID: retro_ggor_768

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:7082230..7082669(+)
• Located in intron of: ENSGGOG00000003230

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DSTN
• Ensembl ID: ENSGGOG00000009007
• Aliases: None
• Description: None

Sequence

>retro_ggor_768
GCCTCAGGAGCGCAAGTTGCTGATGAAGTATGTCGCATTTTTTATGACATGAGAGTTCGTAAATGCTCCACACCAGAAGA
AATCAAGAAAAGAACAAAGGCTGTCATTTTTTTGTCTCAGTGCAGACAAAAAGTGCATCATGTAGAAGGCAAAGAGATCT
TGGTTGGTTGGAGATGTTGGTGTAACTAAAAGTGAGCCTTTCAAGCATTTTGTGGGAATGCTTCCTGAAAAAGATTGTTA
CTATGCTTTGTATGATGCAAGCTTTGAAACAAAAGAATCCAGAAGAATTGATGTTTTCTTGTGGGCATCAGAACTAGCAC
CTTTGAAAAGTAAAATGATCTATACAAGCTCCAAGGATGCAATCAAAAAGAAATTTCAAGGCATAAAACATGAATGGCAA
ACAAACGGACCAGAAGATCTCAATCGGGCTTGTACTGCT

Alignment

ORF - retro_ggor_768 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.88 %
• Parental protein coverage: 89.7 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIF-CLSADKKCIIVEEGKEILVGDVGVTITDPFKH
          ASG.QVADEVCRIFYDM.VRKCSTPEEIKKR.KAVIF.CLSADKKCI........LVGDVGVT...PFKH
Retrocopy ASGAQVADEVCRIFYDMRVRKCSTPEEIKKRTKAVIF>CLSADKKCIM*KAKRSWLVGDVGVTKSEPFKH

Parental  FVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGP
          FVGMLPEKDC.YALYDASFETKESR......FLWA.ELAPLKSKMIY.SSKDAIKKKFQGIKHE.Q.NGP
Retrocopy FVGMLPEKDCYYALYDASFETKESRRIDV--FLWASELAPLKSKMIYTSSKDAIKKKFQGIKHEWQTNGP

Parental  EDLNRACIA
          EDLNRAC.A
Retrocopy EDLNRACTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	101.47 RPM
SRP007412_cerebellum	0.08 RPM	62.29 RPM
SRP007412_heart	0.00 RPM	27.96 RPM
SRP007412_kidney	0.00 RPM	189.60 RPM
SRP007412_liver	0.00 RPM	109.55 RPM
SRP007412_testis	0.10 RPM	108.47 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_768 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_768 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 21 parental genes, and 38 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015434	1 retrocopy	retro_btau_880,
Choloepus hoffmanni	ENSCHOG00000003110	5 retrocopies	retro_chof_1308, retro_chof_1656, retro_chof_1758, retro_chof_2297, retro_chof_72,
Cavia porcellus	ENSCPOG00000005573	2 retrocopies	retro_cpor_700, retro_cpor_812,
Dasypus novemcinctus	ENSDNOG00000000934	1 retrocopy	retro_dnov_24,
Erinaceus europaeus	ENSEEUG00000011893	1 retrocopy	retro_eeur_529,
Homo sapiens	ENSG00000125868	1 retrocopy	retro_hsap_952,
Gorilla gorilla	ENSGGOG00000009007	1 retrocopy	retro_ggor_768 ,
Gorilla gorilla	ENSGGOG00000023183	5 retrocopies	retro_ggor_1832, retro_ggor_326, retro_ggor_357, retro_ggor_389, retro_ggor_397,
Microcebus murinus	ENSMICG00000013687	1 retrocopy	retro_mmur_765,
Macaca mulatta	ENSMMUG00000013786	1 retrocopy	retro_mmul_782,
Mus musculus	ENSMUSG00000015932	1 retrocopy	retro_mmus_3314,
Nomascus leucogenys	ENSNLEG00000009679	1 retrocopy	retro_nleu_2458,
Oryctolagus cuniculus	ENSOCUG00000027456	1 retrocopy	retro_ocun_1891,
Ochotona princeps	ENSOPRG00000000976	2 retrocopies	retro_opri_1078, retro_opri_696,
Pongo abelii	ENSPPYG00000010727	1 retrocopy	retro_pabe_812,
Pan troglodytes	ENSPTRG00000013275	1 retrocopy	retro_ptro_659,
Pteropus vampyrus	ENSPVAG00000000420	1 retrocopy	retro_pvam_1275,
Rattus norvegicus	ENSRNOG00000005924	1 retrocopy	retro_rnor_1710,
Sus scrofa	ENSSSCG00000007085	1 retrocopy	retro_sscr_954,
Tupaia belangeri	ENSTBEG00000017634	8 retrocopies	retro_tbel_1206, retro_tbel_1977, retro_tbel_2425, retro_tbel_2880, retro_tbel_2881, retro_tbel_4020, retro_tbel_679, retro_tbel_851,
Tursiops truncatus	ENSTTRG00000007291	1 retrocopy	retro_ttru_1503,