RetrogeneDB ID: | retro_itri_1063 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393366.1:1031752..1032033(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNL4A | ||
Ensembl ID: | ENSSTOG00000022277 | ||
Aliases: | None | ||
Description: | thioredoxin-like 4A [Source:HGNC Symbol;Acc:30551] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 66.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SYMLPHLHNGWQVDQAIL-SEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN |
S..L.HLHN.WQVDQA.L..EED..VV..FGHDWDPTC.KMD.V..S..EK...F.V.Y.VDITEV.DF. | |
Retrocopy | SNKLQHLHNSWQVDQAFL<LEEDLIVVN*FGHDWDPTCIKMDDVP*SLIEKI*SF-VLYPVDITEVSDFK |
Parental | KMYELYDPCTVMFFFRNKHIMIDLGT |
K.YELY.P..VM.F.RNKHI.IDLGT | |
Retrocopy | KIYELYNPYIVMLFYRNKHIRIDLGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010130 | 2 retrocopies | |
Homo sapiens | ENSG00000141759 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005285 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000003190 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009188 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001613 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008378 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000034753 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010136 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017596 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022277 | 1 retrocopy |
retro_itri_1063 ,
|
Tarsius syrichta | ENSTSYG00000009428 | 1 retrocopy |