RetrogeneDB ID: | retro_rnor_2458 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:53368865..53369114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Txnl4a | ||
Ensembl ID: | ENSRNOG00000017596 | ||
Aliases: | None | ||
Description: | thioredoxin-like 4A [Source:MGI Symbol;Acc:MGI:1351613] |
Percent Identity: | 60.71 % |
Parental protein coverage: | 59.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNN |
FGH.W.P.C.K..EVL.S.....K.FAV..L...T.VPDFNK..E.YDP.TVM.FFRNK.I.ID.G.GN. | |
Retrocopy | FGHYWGPVCIKT-EVLNSMVAEAKQFAVLCLMGTTGVPDFNKTRERYDPRTVMVFFRNKRIKIDFGPGNY |
Parental | NKINWAMEDKQEMV |
NKINW..EDKQ..V | |
Retrocopy | NKINWVIEDKQRIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .31 RPM |
SRP017611_liver | 0 .00 RPM | 9 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010130 | 2 retrocopies | |
Homo sapiens | ENSG00000141759 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005285 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000003190 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009188 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001613 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008378 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000034753 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010136 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017596 | 2 retrocopies |
retro_rnor_1358, retro_rnor_2458 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000022277 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009428 | 1 retrocopy |