RetrogeneDB ID: | retro_itri_199 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393279.1:9196462..9196781(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA5 | ||
Ensembl ID: | ENSSTOG00000005326 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 5 [Source:HGNC Symbol;Acc:19201] |
Percent Identity: | 61.26 % |
Parental protein coverage: | 92.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | IPPWLKV-PEDLKDPEVFQVPTRLLEALFGRRGCRIPYVEQVSKAMLELKTLESSE-FTEVVVYGSYLSK |
IP.W.KV..EDL.DP..FQV...LLEAL.G..G..IPY..Q..KAML..K.LESS.....VVVYGS.L.. | |
Retrocopy | IPLWVKV<SEDLRDPVMFQVQMQLLEALLGLHGS*IPYSKQARKAML*QKALESSD<SPKVVVYGSHLLS |
Parental | LRT-RWMLQSLAEWHRQRQERGMLKLEEAMNAL-ELSPWMK |
.R...WMLQSLAEW..Q.Q..GMLKL.EAMN.L..LSPWMK | |
Retrocopy | PRS<KWMLQSLAEWQHQWQKPGMLKLGEAMNTL>QLSPWMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002647 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012338 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009945 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011544 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000000378 | 2 retrocopies | |
Homo sapiens | ENSG00000203909 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012001 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004463 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000417 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060461 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000016771 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000029547 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000199 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000004283 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005326 | 2 retrocopies |
retro_itri_199 , retro_itri_703,
|