RetrogeneDB ID: | retro_itri_388 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393288.1:20049409..20050398(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000015205 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000004003 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.75 % |
Parental protein coverage: | 91.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSPGRGKYDFYIGLGLAMTSSIFIGGSFILKKKG--LLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGA |
MSPGRGKYDF.IGL.LAMTSSIFIGGSFIL......LLRLARKG.MRAGQGGHAYLKEWLWWAGLLSMGA | |
Retrocopy | MSPGRGKYDFCIGLALAMTSSIFIGGSFILXXXXXDLLRLARKGPMRAGQGGHAYLKEWLWWAGLLSMGA |
Parental | GEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIET |
.EVANFAA.AFAPATLVTPLGALSVLVSAILSSY.LNERLNLHGKI.CLLSILGSTVMVIHAPKEEEIE. | |
Retrocopy | VEVANFAACAFAPATLVTPLGALSVLVSAILSSYSLNERLNLHGKIRCLLSILGSTVMVIHAPKEEEIEM |
Parental | LNEMSHKLGDPGFVVFATIVVIVSLILIFVVGPRHGQTNILVYITICSVIGAFSVSCAKGLGITIKELLA |
L.EMSHKLGDPGFVVFATIVVIVSLILIFVVGPRHGQTNILVYITICSVIG.FSVSCAKG.GITIKELLA | |
Retrocopy | LIEMSHKLGDPGFVVFATIVVIVSLILIFVVGPRHGQTNILVYITICSVIGVFSVSCAKGMGITIKELLA |
Parental | GKPVLRHPLAWILLLSLVICVSTQINYLNRALDIFNTSLVTPIYYVFFTTSVLTCSAILFKEWQDMPADD |
GK..LRHPLAWILLLSLVICVSTQIN.LNRALDIFNTSLVTPIYYVFFTTSVLTCSAILFKEWQDMPADD | |
Retrocopy | GKRGLRHPLAWILLLSLVICVSTQINDLNRALDIFNTSLVTPIYYVFFTTSVLTCSAILFKEWQDMPADD |
Parental | IIGTLSGFFTII-VGIFLLHAFKDVSFSLASLPVSFRKDDKAMNGNLPTMY |
IIGTLSGFFTI..VGIFLL.AFKDVSFSLASLPVSFRKDDKAMN.NLPTMY | |
Retrocopy | IIGTLSGFFTIM<VGIFLLRAFKDVSFSLASLPVSFRKDDKAMNVNLPTMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013824 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005553 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005448 | 1 retrocopy | |
Equus caballus | ENSECAG00000006379 | 1 retrocopy | |
Felis catus | ENSFCAG00000023073 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003892 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030452 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010746 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004003 | 3 retrocopies |
retro_itri_1847, retro_itri_347, retro_itri_388 ,
|
Vicugna pacos | ENSVPAG00000000671 | 1 retrocopy |