Parental gene:

NIPA2, ENSCJAG00000005448

Aliases:None
Description:non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:191678..218747(-)


>ENSCJAG00000005448
ATGAGCCAGGGGCGTGGAAAATATGACTTCTATATTGGTCTGGGATTGGCTATGAGCTCCAGCATTTTCATTGGAGGCAG
TTTCATTTTGAAAAAAAAAGGCCTCCTTCGACTTGCCAGGAAAGGCTCTATGAGAGCAGGTCAAGGTGGCCATGCATATC
TTAAGGAATGGTTGTGGTGGGCCGGACTGCTGTCGATGGGAGCTGGTGAGGTGGCCAACTTTGCTGCTTATGCGTTTGCA
CCAGCCACACTAGTGACTCCATTAGGCGCTCTCAGCGTTCTAGTAAGTGCCATTCTTTCTTCATACTTTCTAAATGAAAG
ACTTAATCTTCATGGGAAAATTGGGTGTTTGCTAAGTATTCTAGGATCTACGGTTATGGTCATTCACGCTCCAAAAGAAG
AGGAGATTGAAACTCTAGATGAAATGTCTCACAAGCTAGGTGATCCAGGTTTTGTGGTCTTTGCAACCCTTGTGGTCATT
GTGGCCTTGATACTAATCTTTGTGGTGGGTCCTCGCCATGGACAGACAAACATTCTTGTGTACATCACAATCTGCTCTGT
GATCGGCGCGCTTTCTGTCTCCTGTGTGAAGGGCCTGGGCATCGCCATCAAGGAGCTGTTTGCTGGAAAGCCTGTTCTGC
GGCACCCCCTGGCCTGGGTGCTGCTGCTGAGCCTCCTCGTCTGTGTGAGCACACAGATTAATTACCTAAATCGGGCCTTG
GATATATTCAACACTTCTATCGTGACTCCAATCTATTATGTATTCTTTACAACATCCGTTTTAACTTGTTCAGCTATTCT
TTTTAAGGAGTGGCAGGATATGCCGGTTGATGATGTCATTGGTACTTTGAGTGGCTTCTTTACAATCATTGTGGGGATAT
TCCTGTTGCATGCCTTTAAAGACGTCAGCTTTAGCCTAGCAAGTCTGCCTGTGTCGTTTCGAAAAGACGAGAAAGCAATG
AATGGCAATCTCTCTAATATGTATGAAGTTCTCAATAATAATGAAGAAAGCTTAACCTGTGGAATCGAACAACACACTGG
TGACAGTATCTCGAGAAGAAATGGAAATCTGACAGCATTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 21 .47 RPM
SRP051959_skeletal_muscle 8 .47 RPM
SRP051959_lymph_node 30 .62 RPM
SRP051959_lung 20 .38 RPM
SRP051959_liver 11 .94 RPM
SRP051959_kidney 24 .32 RPM
SRP051959_heart 12 .02 RPM
SRP051959_colon 26 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013824 ortholog_one2one 1 retrogene
retro_amel_1163,
Choloepus hoffmanni ENSCHOG00000005553 ortholog_one2many 1 retrogene
retro_chof_9,
Equus caballus ENSECAG00000006379 ortholog_one2one 1 retrogene
retro_ecab_656,
Felis catus ENSFCAG00000023073 ortholog_one2one 1 retrogene
retro_fcat_246,
Macaca mulatta ENSMMUG00000003892 ortholog_one2one 1 retrogene
retro_mmul_1510,
Mus musculus ENSMUSG00000030452 ortholog_one2one 1 retrogene
retro_mmus_3551,
Oryctolagus cuniculus ENSOCUG00000010746 ortholog_one2one 3 retrogenes
retro_ocun_1581, retro_ocun_773, retro_ocun_809,
Ictidomys tridecemlineatus ENSSTOG00000004003 ortholog_one2many 3 retrogenes
retro_itri_1847, retro_itri_347, retro_itri_388,
Vicugna pacos ENSVPAG00000000671 ortholog_one2one 1 retrogene
retro_vpac_285,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1506 63.30 51.39
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Download FASTA sequences of all ENSCJAG00000005448 retrocopies