Parental gene:

NIPA2, ENSECAG00000006379

Aliases:None
Description:non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044]
Organism:Horse (Equus caballus)
Coordinates:1:113988302..114014970(+)


>ENSECAG00000006379
ATGAGCCAGGGGCATGGAAAATATGACTTTTATATTGGTCTGGGATTGGCTATGAGCTCCAGCATTTTCATTGGAGGGAG
TTTCATTTTGAAAAAAAAAGGCCTTCTGCGACTTGCCAGAAAAGGCTCCATGAGAGCAGGTCAAGGTGGCCATGCATATC
TTAAAGAATGGTTGTGGTGGGCTGGACTGCTATCAATGGGAGCGGGCGAAGTGGCCAACTTTGCTGCATATGCCTTTGCA
CCAGCCACCCTAGTGACTCCATTAGGAGCTCTCAGCGTCCTAGTAAGTGCCATTCTTTCTTCATACTTTCTAAATGAAAG
ACTTAATCTTCATGGGAAAATTGGATGTTTGCTAAGTATTCTAGGATCTACAGTTATGGTCATTCATGCTCCAAAAGAAG
AGGAGATTGAGACTTTAAATGAAATGTCTCACAAACTAGGGGATCCAGGTTTTGTGGTCTTTGCAACACTTGTGGTCATT
GTATCCTTGATATTAATCTTCGTGGTGGGACCTCGCCATGGACAGACAAACATTCTTGTGTATATAACAATCTGCTCTGT
CATTGGAGCGTTTTCTGTCTCCTGTGTTAAGGGCCTGGGTATTGCTATCAAAGAGCTGTTTGCTGGAAAGCCTGTACTGC
GACATCCCCTGGCCTGGATTCTGCTGTTGAGCCTTATAGTCTGTGTGAGCACACAGATTAATTACCTGAACAGGGCCCTG
GACATATTCAACACTTCCATCGTGACTCCAATATATTACGTATTCTTTACAACATCAGTTTTAACTTGTTCAGCTATTCT
TTTTAAGGAGTGGCAAGATATGCCTGTTGATGATGTCATTGGTACTTTGAGTGGCTTCTTTACAATCATTGTGGGAATAT
TCTTATTGCATGCCTTTAAAGACGTCAGCTTTAGTCTAGCAAGTCTGCCTGTGTCTTTACGAAAAGACGAAAAAGCAGTG
AATGGCAATCTCTCTAATATGTATGAAGTTCTTAATAATAATGAAGAAAGCTTAACCTGTGGAATTGAACAACACACTAG
TGAAAATATCTCCCGAAGAAATGGAAACCTGACAGCTTTTTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 12 .57 RPM
SRP021940_cerebellum 31 .52 RPM
SRP021940_embryo 23 .68 RPM
SRP021940_placental_villous 25 .11 RPM
SRP021940_synovial_membrane 17 .87 RPM
SRP021940_testis 41 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013824 ortholog_one2one 1 retrogene
retro_amel_1163,
Choloepus hoffmanni ENSCHOG00000005553 ortholog_one2many 1 retrogene
retro_chof_9,
Callithrix jacchus ENSCJAG00000005448 ortholog_one2one 1 retrogene
retro_cjac_1506,
Felis catus ENSFCAG00000023073 ortholog_one2one 1 retrogene
retro_fcat_246,
Macaca mulatta ENSMMUG00000003892 ortholog_one2one 1 retrogene
retro_mmul_1510,
Mus musculus ENSMUSG00000030452 ortholog_one2one 1 retrogene
retro_mmus_3551,
Oryctolagus cuniculus ENSOCUG00000010746 ortholog_one2one 3 retrogenes
retro_ocun_1581, retro_ocun_773, retro_ocun_809,
Ictidomys tridecemlineatus ENSSTOG00000004003 ortholog_one2many 3 retrogenes
retro_itri_1847, retro_itri_347, retro_itri_388,
Vicugna pacos ENSVPAG00000000671 ortholog_one2one 1 retrogene
retro_vpac_285,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_656 57.89 77.78
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Download FASTA sequences of all ENSECAG00000006379 retrocopies