RetrogeneDB ID: | retro_meug_1501 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold427167:0..818(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A2 | ||
Ensembl ID: | ENSMEUG00000005018 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:3192] |
Percent Identity: | 73.91 % |
Parental protein coverage: | 59.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLG-VKQLIVGINKMDSTEPPYSEKRYDEIVKEVSAYI |
DCAVLIV..GVGE.EAG.SKNGQTREH.LLA.TLG.VKQ.I.G.NKMDSTEPP.S.KRY.EI.KEVS.YI | |
Retrocopy | DCAVLIVVTGVGEVEAGVSKNGQTREHVLLACTLG<VKQVIIGVNKMDSTEPPFSQKRYEEIAKEVSTYI |
Parental | KKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRL |
KKIGYNP.TV.FVPIS.W.G.NMLEP..NMPWFKG.KV.RK.GNA.G...LEALD.ILPP..PTDK...L | |
Retrocopy | KKIGYNPDTVAFVPISSWNGVNMLEPKSNMPWFKGCKVSRKGGNANGTTPLEALDCILPPAHPTDKSFCL |
Parental | PLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVK |
PLQDVYKI..IG.V.VG.V.TG.L..G.VVTF.PVN.TTEVKSVEMHHEALSEALP.DNVGFNVKNVSVK | |
Retrocopy | PLQDVYKIHSIGRVLVG*VKTGVL--GIVVTFTPVNVTTEVKSVEMHHEALSEALPRDNVGFNVKNVSVK |
Parental | DIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSG |
D...G.V.GDS....P.EA..FT...IIL.HPGQIS..Y.PV.DCHT..IA.KFAE.KEKIDRRSG | |
Retrocopy | DVHHGIVTGDSNNNSPVEAPGFTA*IIILSHPGQISPVYAPVLDCHTVQIASKFAEPKEKIDRRSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |