RetrogeneDB ID:

retro_meug_1421

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold398275:7..926(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EEF1A2
Ensembl ID:ENSMEUG00000005018
Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:3192]


Retrocopy-Parental alignment summary:






>retro_meug_1421
TCCCTGTGGAATTTGAGACCAGCAAGTACTATGTGACCATTATTGATGCTCCAGGACACACAGACTTCATCAAGAACATG
ATTTCAGGCACATCTCAGGGGGACTGTGCTGTCCTGATTGTTGCTACTGGTGTTGGTGAATTTGAAGCTGGTATCTCAAA
GGATGGGCAGGCCCGTGAGAATGCCCTTGTGGCCTAAACATTAGGTGTAAAACAACTGACTATTGGTGTAAACAAAATGG
ATTCCACAGAGCCCCCCTACAGCCAGAAGTGATATGAGGAAATTCTCAAGGAAGTCAGTACCTATATTAAGAAAACCGGC
TACAACACTGACATAGTAGCTTTTGTGCCAATTTCAGGTTGAAATGGTGTCAACCTGTTGGAGTCTAACTCTAATATGCC
CTGGTTCAAGGGATGGAAAGTCAGTCTTAAGGGTGGCAACGCCAGTGGAACTACACTGCTTGAAGCTTTGGATTGCATTC
TGCCACCACCTCATGCAACTGACAAGTCCTTTTGTCTACCCCTCCAAGATGTCTACAAGATTGACAGTACTGGTACGGTA
TCTGTTGGCAGAGCAGAAACTGGTGTTCTAGGCATGGTGCTGACCGTCACCCCCGTCAATATTACAACTGAATAAAGTCT
GTCGAAATGCACCATGAAGCTTTGAGTGAGGCTCTGCCAGGGGATAATGTTGGTTTCAATGTCAAGAATGTGTCTGTCAA
AGATGTCCATCACGGTATTGTGGCTGGTGATAGCAAGAATGACTCACTTATGGAAGCAGCTGGTTTCACTGAACAGATTA
TTATCCAGAACCATCCAGACCAAATCAGTCCTGGCTATGCACCTGGGTAGGATTGTCACACTGCTCCCATTGCTTGTAAG
TTTGCTGAACTGAAGGAGAAGATTGATCATAGTTCTGGT

ORF - retro_meug_1421 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.6 %
Parental protein coverage: 66.74 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalSLW-KFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLG
SLW..FET.KYY.TIIDAPGH.DFIKNMI.GTSQ.DCAVLIVA.GVGEFEAGISK.GQ.RE.AL.A.TLG
RetrocopySLW<EFETSKYYVTIIDAPGHTDFIKNMISGTSQGDCAVLIVATGVGEFEAGISKDGQARENALVA*TLG
ParentalVKQLIVGINKMDSTEPPYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGW
VKQL..G.NKMDSTEPPYS.K.Y.EI.KEVS.YIKK.GYN...V.FVPISG..G.N.LE...NMPWFKGW
RetrocopyVKQLTIGVNKMDSTEPPYSQK*YEEILKEVSTYIKKTGYNTDIVAFVPISG*NGVNLLESNSNMPWFKGW
ParentalKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVN
KV..K.GNASG..LLEALD.ILPP...TDK...LPLQDVYKI...GTV.VGR.ETG.L..GMV.T..PVN
RetrocopyKVSLKGGNASGTTLLEALDCILPPPHATDKSFCLPLQDVYKIDSTGTVSVGRAETGVL--GMVLTVTPVN
ParentalITTE-VKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQI
ITTE..KSVEMHHEALSEALPGDNVGFNVKNVSVKD...G.V.GDSK.D...EAA.FT.Q.II.NHP.QI
RetrocopyITTE<IKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHHGIVAGDSKNDSLMEAAGFTEQIIIQNHPDQI
ParentalSAGYSPVIDCHTAHIACKFAELKEKIDRRSG
S.GY.P..DCHTA.IACKFAELKEKID..SG
RetrocopySPGYAPG*DCHTAPIACKFAELKEKIDHSSG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1421 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1421 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 45 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000132491 retrocopy
Equus caballus ENSECAG000000222601 retrocopy
Latimeria chalumnae ENSLACG000000029521 retrocopy
Loxodonta africana ENSLAFG000000280811 retrocopy
Macropus eugenii ENSMEUG00000005018 23 retrocopies
Myotis lucifugus ENSMLUG000000167601 retrocopy
Mustela putorius furoENSMPUG000000082893 retrocopies
Nomascus leucogenys ENSNLEG000000100602 retrocopies
Ornithorhynchus anatinus ENSOANG000000049081 retrocopy
Otolemur garnettii ENSOGAG000000046308 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000288621 retrocopy
Tursiops truncatus ENSTTRG000000018351 retrocopy
Drosophila melanogaster FBgn00005571 retrocopy



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