Parental gene:

eef1a1b, ENSLACG00000002952

Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 1b [Source:ZFIN;Acc:ZDB-GENE-050417-327]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH131072.1:65349..79193(-)


>ENSLACG00000002952
ATGGGAAAGGAAAGGACTCATATCAACATTGTTGTCATTGGACACGTCGACTCTGGCAAGTCCACCACCACAGGTCACCT
CATCTATAAATGTGGTGGTATTGATAAAAGAACCATTGAAAAATTTGAGAAGGAAGCTGCTGAGATGGGCAAGGGCTCCT
TCAAATATGCTTGGGTGTTGGACAAGCTGAAGGCAGAGCGCGAGCGTGGTATCACCATTGACATTGCCCTGTGGAAATTC
GAGACCGGCAAGTACTACATCACCATCATTGATGCCCCTGGACATAGAGACTTCATCAAGAATATGATCACTGGTACCTC
CCAGGCTGATTGTGGTGTCCTGATTGTTGCTGCTGGTGTTGGTGAGTTTGAAGCTGGTATCTCTAAGAATGGTCAGACTC
GTGAGCATGCTTTGCTGGCCTACACTTTGGGTGTGAAACAGCTGATTGTTGGTGTAAACAAGATGGACTCTACTGAGCCC
CCTTATAACCAGGAAAGATATCAAGAAATTGTAAAGGAAGTCGGTACCTATATCAAAAAAATTGGTTATAACCCTGATGC
CGTTGCATTCGTGCCTATCTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGCCCAAATATGACCTGGTTCAAGGGAT
GGAATATTAAAAACAAGAATAAAAACTGTGTGTCTGGTTGCACTCTGTTGGAAGCCCTGGATGCCATTGAACCACCATCT
CGTCCAACTGACAGGCCTCTTCGTCTGCCCCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTGCCAGTTGGTAG
GGTGGAAACTGGTTATCTGAAACCAAACATGTTGGTCACTTTTTCTCCTGCTAATATCACTACTGAAGTAAAGTCTGTTG
AAATGCATCATGAGTCTCTCTCTCAAGCTCAGCCAGGTGACAACGTTGGCTTTAATGTTAAAAATGTGTCTGTGAAAGAT
ATCCGTCGAGGCAATGTTGCTGGCGACAGCAAAAATGACCCACCACAAGAGGCTGGAAGCTTTATTGCACAGGTCATCAT
CCTGAACCATCCTGGCCAAATAAGTGCTGGCTATACTCCTGTGCTAGATTGCCACACTGCTCATATTTCATGCAAATTTG
CTGAGCTTCTTGAAAAGATAGACCGTCGTTCTGGTAAAAAACTGGAAGACTCCCCTAAGTCGCTGAAATCAGGGGATGCT
TGTATAGTTAACATGATTCCTTCAAAGCCAATGTGTGTGGAGTGTTTCTCTGCATATGCTCCACTGGGTCGTTTTGCAGT
TCGTGACATGAGACAAACTGTTGCTGTTGGTGTTATCAAGCAGGTTGAAAAGAAGAGTGGTGGTGTTGGCAAAATCACTA
AATCTGCAGCAAAGAAAAAATCGATAGAGGGAAAG

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 586 .42 RPM
DRP000627_kidney 213 .12 RPM
DRP000627_pelvic_fin 854 .38 RPM
DRP000627_pharynx 86 .67 RPM
DRP000627_gill 266 .12 RPM
DRP000627_tail_muscle 74 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Macropus eugenii ENSMEUG00000005018 possible_ortholog 23 retrogenes
retro_meug_1067, retro_meug_110, retro_meug_1160, retro_meug_1240, retro_meug_1334, retro_meug_135, retro_meug_1421, retro_meug_1451, retro_meug_1465, retro_meug_1501, retro_meug_1662, retro_meug_1690, retro_meug_1710, retro_meug_1829, retro_meug_2023, retro_meug_2044, retro_meug_2050, retro_meug_316, retro_meug_601, retro_meug_755, retro_meug_792, retro_meug_850, retro_meug_920,
Myotis lucifugus ENSMLUG00000016760 possible_ortholog 1 retrogene
retro_mluc_1250,
Mustela putorius furo ENSMPUG00000008289 possible_ortholog 3 retrogenes
retro_mputfur_1030, retro_mputfur_609, retro_mputfur_761,
Nomascus leucogenys ENSNLEG00000010060 possible_ortholog 2 retrogenes
retro_nleu_11, retro_nleu_1489,
Ornithorhynchus anatinus ENSOANG00000004908 possible_ortholog 1 retrogene
retro_oana_73,
Otolemur garnettii ENSOGAG00000004630 possible_ortholog 8 retrogenes
retro_ogar_1067, retro_ogar_2034, retro_ogar_2329, retro_ogar_2497, retro_ogar_2583, retro_ogar_3191, retro_ogar_3270, retro_ogar_643,
Ictidomys tridecemlineatus ENSSTOG00000028862 possible_ortholog 1 retrogene
retro_itri_1028,
Tursiops truncatus ENSTTRG00000001835 possible_ortholog 1 retrogene
retro_ttru_993,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_39 83.03 82.15
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Download FASTA sequences of all ENSLACG00000002952 retrocopies