RetrogeneDB ID: retro_mputfur_761

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:11150711..11151406(+)
• Located in intron of: ENSMPUG00000014073

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EEF1A2
• Ensembl ID: ENSMPUG00000008289
• Aliases: None
• Description: eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:3192]

Sequence

>retro_mputfur_761
ACAGTAGCGTTTGTGCCAATTTCTGGTTGGAATTGTGACAACATGCTGAAGCCCAGTGCTAACATGCCTTGGTTTAAGGG
ATTGAAAGTCACCTGTAAAGATGGGAATGCAAGTAGAACCACATTGCTTGAGGCTCTGGATTATATTCTACCACCAACTT
GTCCAACTGACAAGCCCTTTGTGTCTGTTTCTTGAGGATGTCTACAAAATTAGTGGTATTGGTGCTGTCCCTGTGGGTGG
AGTGGAGACTGGTGTTCTTAAACCTGGCATGATGGTCACCTTTGCTCCAGTCAATGTTACAACTAAATTAAAGTTTGTTG
AGATGCACCACGAAGCTTTGAGTGGGACAATGTGGACATCAATGTCATGAATGTATCTGTCAACAATGTTTATTGTGGCA
ATGTGGTTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTTATGGCTCGGGTGATTATCCTGAATCATCCT
GGCTGAATCATTGCTGGATATGCACCTGTGCTGGACTGTCACACAACTCACATTGCTTGCAAGTTTGCTGAGCTGAAGGA
GAGGGTAGATCATCATTCTGGAAAAAAGCTGGAAGATGGTCCCAAGTTCTTCAAATCTAGTGATCTCGTCATCATTGATA
TGTTCTTGGCAAGCCTATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGAT

Alignment

ORF - retro_mputfur_761 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.55 %
• Parental protein coverage: 55.92 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  TVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKP-LRLPLQDVYK
          TV.FVPISGW..DNML.PS.NMPWFKG.KV..K.GNAS...LLEALD.ILPPT.PTDKP.L.L.L.DVYK
Retrocopy TVAFVPISGWNCDNMLKPSANMPWFKGLKVTCKDGNASRTTLLEALDYILPPTCPTDKP>LCLFLEDVYK

Parental  IGGIGTVPVGRVETGVLRPGMVVTFAPVNITTEVKSVEMHHEALSEALPG-DNVGFNVKNVSVKDIRRGN
          I.GIG.VPVG.VETGVL.PGM.VTFAPVN.TT..K.VEMHH....EAL.G.DNV..NV.NVSV.....GN
Retrocopy ISGIGAVPVGGVETGVLKPGMMVTFAPVNVTTKLKFVEMHH----EALSG<DNVDINVMNVSVNNVYCGN

Parental  VCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKAL
          V.GDSK.DPP.EAA.F...VIILNHPG.I.AGY.PV.DCHT.HIACKFAELKE..D..SGKKLED.PK..
Retrocopy VVGDSKNDPPMEAAGFMARVIILNHPG*IIAGYAPVLDCHTTHIACKFAELKERVDHHSGKKLEDGPKFF

Parental  KSGDAAIVEM-VPGKPMCVESFSQYPPLD
          KS.D..I..M.V.GKPMCVESFS.YPPLD
Retrocopy KSSDLVIIDM<VLGKPMCVESFSDYPPLD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_761 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_761 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 61 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013249	1 retrocopy	retro_cfam_1007,
Equus caballus	ENSECAG00000022260	1 retrocopy	retro_ecab_802,
Latimeria chalumnae	ENSLACG00000002952	1 retrocopy	retro_lcha_39,
Loxodonta africana	ENSLAFG00000028081	1 retrocopy	retro_lafr_651,
Macropus eugenii	ENSMEUG00000005018	23 retrocopies	retro_meug_1067, retro_meug_110, retro_meug_1160, retro_meug_1240, retro_meug_1334, retro_meug_135, retro_meug_1421, retro_meug_1451, retro_meug_1465, retro_meug_1501, retro_meug_1662, retro_meug_1690, retro_meug_1710, retro_meug_1829, retro_meug_2023, retro_meug_2044, retro_meug_2050, retro_meug_316, retro_meug_601, retro_meug_755, retro_meug_792, retro_meug_850, retro_meug_920,
Myotis lucifugus	ENSMLUG00000016760	1 retrocopy	retro_mluc_1250,
Mustela putorius furo	ENSMPUG00000003816	6 retrocopies	retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo	ENSMPUG00000004271	10 retrocopies	retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Mustela putorius furo	ENSMPUG00000008289	3 retrocopies	retro_mputfur_1030, retro_mputfur_609, retro_mputfur_761 ,
Nomascus leucogenys	ENSNLEG00000010060	2 retrocopies	retro_nleu_11, retro_nleu_1489,
Ornithorhynchus anatinus	ENSOANG00000004908	1 retrocopy	retro_oana_73,
Otolemur garnettii	ENSOGAG00000004630	8 retrocopies	retro_ogar_1067, retro_ogar_2034, retro_ogar_2329, retro_ogar_2497, retro_ogar_2583, retro_ogar_3191, retro_ogar_3270, retro_ogar_643,
Ictidomys tridecemlineatus	ENSSTOG00000028862	1 retrocopy	retro_itri_1028,
Tursiops truncatus	ENSTTRG00000001835	1 retrocopy	retro_ttru_993,
Drosophila melanogaster	FBgn0000557	1 retrocopy	retro_dmel_9,