RetrogeneDB ID: | retro_meug_1912 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold7171:16354..16946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1A | ||
Ensembl ID: | ENSMEUG00000005609 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
Percent Identity: | 54.41 % |
Parental protein coverage: | 56.61 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | NNHEVHIYKKNGNQWVKAHELKEH-NGHITGIDWA-PKSDRIVTCGADRNA-YVWSQKDGIWKPTLVILR |
NNHE..IYK.NGN..V.A.ELK...NG.IT.ID...PK...I..CG...NA.Y.WS.KDG..KP.LVIL. | |
Retrocopy | NNHEERIYKINGNK*VEARELKGR>NGNITNID*V>PKAKYILPCGTNYNA>YAWSKKDGSRKPILVILN |
Parental | INRAATFVKWSPLENKF-AVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPN-NVLLAAGSC |
IN......KWS.LE.K..AVG.GA.LISV.YFESEN..W.SKHI........L.L...PN..V.LA...C | |
Retrocopy | INCEFALSKWSLLEKKL<AVGIGAQLISVYYFESENNYWMSKHIGRTNLF*CLRLGYYPN>QVFLAVEYC |
Parental | DFK-CRVFSAYIKEVDEKPASTPWGTKMPFGQLMSEFGGTGSGGWVHGV-SFSASGNRLAWVSH |
DF..C..F.AYIKE.DE...STPW..K.PFGQ.MS.F...G....V.GV..F.ASGN.L.WV.. | |
Retrocopy | DFN<CEIFLAYIKEMDERSVSTPWSAKLPFGQQMSQFDVNGNDN*VKGV<YFFASGNHLSWVNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |