RetrogeneDB ID: | retro_meug_1755 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold56817:6398..7440(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1A | ||
Ensembl ID: | ENSMEUG00000005609 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
Percent Identity: | 87.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | IALSPNNHEVHIYKKNGNQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGIWKPTLVI |
IAL..NNHEVHIYKKNGNQWVKAHELKEH.GHITGIDWAPKSD.IVTCGADR.AYVWSQKDGIWKPTLVI | |
Retrocopy | IALTSNNHEVHIYKKNGNQWVKAHELKEHDGHITGIDWAPKSDQIVTCGADRSAYVWSQKDGIWKPTLVI |
Parental | LRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHI-KKPIRSTVLSLDWHPNNVLLAAGS |
LRINRAATFVKWSPLENKF.VGSGA.LISVCYFESENDWWVSKHI.KKPIRSTVLSLDWHPNNVLL..GS | |
Retrocopy | LRINRAATFVKWSPLENKFTVGSGAGLISVCYFESENDWWVSKHI<KKPIRSTVLSLDWHPNNVLLSVGS |
Parental | CDFKCRVFSAYIKEVDEKPASTPWGTKMPFGQLMSEFGGTGSGGWVHGVSFSASGNRLAWVSHDSTVSVA |
CDFKCRVFSAYIKEVDEKPASTPWGTKMPFGQLMSEFGG..SGGWVHGVSFSASGN.LAW..HDST.SVA | |
Retrocopy | CDFKCRVFSAYIKEVDEKPASTPWGTKMPFGQLMSEFGGIQSGGWVHGVSFSASGNCLAWICHDSTASVA |
Parental | DAS-KNMXXXXXXXXXXXXXXVSFVSENSVVAAGHDCCPMLFNYDDRGSLTFVSKLDIPKQSIQRNISAM |
DAS.KNM..............VSFVSENS.VAAGHDCCP.LFNYDD.GSLTFVSKLDIP.QSIQRNISAM | |
Retrocopy | DAS<KNMMVSQLKTEFLPLLSVSFVSENSMVAAGHDCCPTLFNYDDPGSLTFVSKLDIPRQSIQRNISAM |
Parental | ERFRNMDKRATTEDRNTALDTLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM |
E.F.N.DKRATTED.NTALDTLHQNS.TQVSIYEVD.QDC..FCTTGIDGAMTIW.FKTLESS.QGLRIM | |
Retrocopy | ECFHNKDKRATTEDGNTALDTLHQNSVTQVSIYEVDNQDCCNFCTTGIDGAMTIWNFKTLESSVQGLRIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |