RetrogeneDB ID:

retro_meug_690

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold16185:13628..14228(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TAGLN2
Ensembl ID:ENSMEUG00000006573
Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]


Retrocopy-Parental alignment summary:






>retro_meug_690
AGAATGGCCAACAGGGGAACTGCTTCAGGACTGAGCCGAGAGGTATAACAGAAAATTGAGAAGCAGTATGATGGAGATCT
GGAGCAGATCCTTATTCAGTGGATTACCATACAGTGCTGGAGGGATGTCGGGCAGCCCCAGCCTGGGCAAGAGAATTTCC
AAAACTGGCTCAAGGATGATATAGTGCTGTGTGAGCTCCTAAATGGGCTATACCCTGAAGGCTGGGGTCCAGTAAAGAAA
ATCCAGGCTTCAGGCCTGGCCTTCAAACAGATGGATTAGATTTCTCTGTTGCTGCAGGTAGCTGAATGCTATGGCATCAA
TGACACTGATATCTTCCAAACTGTGGAACTCTGGGAAGGAAAGAATATGGCCTATGTGCAGTGGACACTGATGAACCTGG
GTGGGTTGGCAGTGGCTCGGGGTGATGGCTTCTTCTCTGCAGATCCTAACTAGTTTCCTAAGAAGTCCAAGGAGGATCTC
TGAAACTTCACAGATAACCAACTGCAGGAGGGCAAGAATGTCACTGGGCTGTAAATAGGCACCAATCATGGAGCATCTCA
GGCAGGCATGACTAGATATGGGATGCCATGACGGATCCTC

ORF - retro_meug_690 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.5 %
Parental protein coverage: 98.03 %
Number of stop codons detected: 6
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRRDVGRPQPGRENFQNWLKDGTVLCELINGL
RMANRG.A.GLSREV.QKIEKQYD.DLEQILIQWIT.QC.RDVG.PQPG.ENFQNWLKD..VLCEL.NGL
RetrocopyRMANRGTASGLSREV*QKIEKQYDGDLEQILIQWITIQCWRDVGQPQPGQENFQNWLKDDIVLCELLNGL
ParentalYPEGQGPVKKIQASGMAFKQMQ-IYQFLQAAERYGINATDIFQTVDLWEGKNMACVQRTLMNLGGLAVAR
YPEG.GPVKKIQASG.AFKQM..I...LQ.AE.YGIN.TDIFQTV.LWEGKNMA.VQ.TLMNLGGLAVAR
RetrocopyYPEGWGPVKKIQASGLAFKQMD*ISLLLQVAECYGINDTDIFQTVELWEGKNMAYVQWTLMNLGGLAVAR
ParentalGDGFFSGDPNWFPKKSKENPRNFTDNQLQEGKNVIGLQMGTNRGASHAGMTGYGMPRQIL
GDGFFS.DPN.FPKKSKE...NFTDNQLQEGKNV.GL..GTN.GAS.AGMT.YGMP..IL
RetrocopyGDGFFSADPN*FPKKSKEDL*NFTDNQLQEGKNVTGL*IGTNHGASQAGMTRYGMP*RIL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_690 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_690 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000020681 retrocopy
Callithrix jacchus ENSCJAG000000061562 retrocopies
Homo sapiens ENSG000001587101 retrocopy
Macropus eugenii ENSMEUG000000029212 retrocopies
Macropus eugenii ENSMEUG00000006573 9 retrocopies
Myotis lucifugus ENSMLUG000000262281 retrocopy
Macaca mulatta ENSMMUG000000047051 retrocopy
Monodelphis domestica ENSMODG000000100321 retrocopy
Nomascus leucogenys ENSNLEG000000133501 retrocopy
Pongo abelii ENSPPYG000000006482 retrocopies
Pan troglodytes ENSPTRG000000015331 retrocopy
Sus scrofa ENSSSCG000000063952 retrocopies
Tarsius syrichta ENSTSYG000000016452 retrocopies
Tursiops truncatus ENSTTRG000000018141 retrocopy



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