RetrogeneDB ID:

retro_tsyr_950

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_252290:86..503(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TAGLN2
Ensembl ID:ENSTSYG00000001645
Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]


Retrocopy-Parental alignment summary:






>retro_tsyr_950
GTGCTGTGTGAGCTCATTAATTCCCCGTTCCCTGAGGGGCAGGCCCCAGTAAAGAAGATCCAGGCATCCACCATGGCCTT
CAAGCAGAGGGAGCAGATCTCCCAGTTCCTGCAAGCAGCTGAGCGCTACGGTATTAACACCACTGACATCTTCCAAACTG
TGGACCTCTGGAAAGGAATGAATATGGTCTGTGTGCAGCGGACGTTGATGAACCTGGGTGGGCTGGCGGTAGCCCAGGGT
GACGGGCTCTTCTCCGGGAATCCCAATTGGTTCCCTAAGAAATCCAAGGAGAACCCTTGGAACTGCTCGGATGACCAGCT
GCAAGAGGGCAAGAACATGATTGAGCTACAGATGGGTACCAACTGCGGCGCGTTTCAGGCAGGCACGACCGGCTATGGAA
TACCCTGTCAGATCCTC

ORF - retro_tsyr_950 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.77 %
Parental protein coverage: 63.18 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVLCELINSLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLM
VLCELINS..PEGQAPVKKIQASTMAFKQ.EQISQFLQAAERYGINTTDIFQTVDLW.G.NM.CVQRTLM
RetrocopyVLCELINSPFPEGQAPVKKIQASTMAFKQREQISQFLQAAERYGINTTDIFQTVDLWKGMNMVCVQRTLM
ParentalNLGGLAVARGDGLFSGDPNWFPKKSKENPRNFSDDQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL
NLGGLAVA.GDGLFSG.PNWFPKKSKENP.N.SDDQLQEGKN.I.LQMGTN.GA.QAG.TGYG.P.QIL
RetrocopyNLGGLAVAQGDGLFSGNPNWFPKKSKENPWNCSDDQLQEGKNMIELQMGTNCGAFQAGTTGYGIPCQIL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_950 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000020681 retrocopy
Callithrix jacchus ENSCJAG000000061562 retrocopies
Homo sapiens ENSG000001587101 retrocopy
Macropus eugenii ENSMEUG000000065739 retrocopies
Myotis lucifugus ENSMLUG000000262281 retrocopy
Macaca mulatta ENSMMUG000000047051 retrocopy
Monodelphis domestica ENSMODG000000100321 retrocopy
Nomascus leucogenys ENSNLEG000000133501 retrocopy
Pongo abelii ENSPPYG000000006482 retrocopies
Pan troglodytes ENSPTRG000000015331 retrocopy
Sus scrofa ENSSSCG000000063952 retrocopies
Tarsius syrichta ENSTSYG00000001645 2 retrocopies
retro_tsyr_1911, retro_tsyr_950 ,
Tarsius syrichta ENSTSYG000000107492 retrocopies
Tursiops truncatus ENSTTRG000000018141 retrocopy



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