Parental gene:

TAGLN2, ENSPPYG00000000648

Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]
Organism:Orangutan (Pongo abelii)
Coordinates:1:91460474..91467853(+)


>ENSPPYG00000000648
ATGGCCAACAGGGGACCTGCGTATGGCCTGAGCCGGGAGGTGCAGCAGAAGATTGAGAAACAATATGATGCAGATCTGGA
GCAGATCCTGATCCAGTGGATCACCACTCAGTGCCGAAAGGATGTGGGCCGGCCCCAGCCTGGACGCGAGAACTTCCAGA
ACTGGCTCAAGGATGGCACGGTGCTATGTGAGCTCATTAATGCACTGTACCCCGAGGGGCAGGCCCCAGTAAAGAAGATC
CAGGCCTCCACCATGGCCTTCAAGCAGATGGAGCAGATCTCTCAGTTCCTTCAAGCAGCTGAGCGCTATGGCATTAACAC
CACTGACATCTTCCAAACTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAATCTGGGTG
GGCTGGCAGTAGCCCGGGATGATGGGCTCTTCTCTGGGGATCCCAACTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGG
AACTTCTCGGATAACCAGCTGCAAGAGGGCAAGAACGTGATCGGGTTACAGATGGGCACCAACCGTGGGGCGTCTCAGGC
AGGCATGACTGGCTACGGGATGCCACGCCAGATCCTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .75 RPM
SRP007412_cerebellum 17 .27 RPM
SRP007412_heart 57 .05 RPM
SRP007412_kidney 115 .19 RPM
SRP007412_liver 94 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002068 ortholog_one2one 1 retrogene
retro_btau_1701,
Callithrix jacchus ENSCJAG00000006156 ortholog_one2one 2 retrogenes
retro_cjac_2035, retro_cjac_2444,
Homo sapiens ENSG00000158710 ortholog_one2one 1 retrogene
retro_hsap_4108,
Macropus eugenii ENSMEUG00000006573 ortholog_one2one 9 retrogenes
retro_meug_1092, retro_meug_1242, retro_meug_128, retro_meug_1442, retro_meug_1998, retro_meug_309, retro_meug_483, retro_meug_690, retro_meug_880,
Myotis lucifugus ENSMLUG00000026228 ortholog_one2many 1 retrogene
retro_mluc_274,
Macaca mulatta ENSMMUG00000004705 ortholog_one2one 1 retrogene
retro_mmul_2328,
Monodelphis domestica ENSMODG00000010032 ortholog_one2one 1 retrogene
retro_mdom_1178,
Nomascus leucogenys ENSNLEG00000013350 ortholog_one2one 1 retrogene
retro_nleu_575,
Pongo abelii ENSPPYG00000009302 within_species_paralog 12 retrogenes
retro_pabe_1299, retro_pabe_1397, retro_pabe_1838, retro_pabe_1920, retro_pabe_2171, retro_pabe_2249, retro_pabe_2900, retro_pabe_3512, retro_pabe_3515, retro_pabe_3543, retro_pabe_3823, retro_pabe_407,
Pan troglodytes ENSPTRG00000001533 ortholog_one2one 1 retrogene
retro_ptro_2788,
Sus scrofa ENSSSCG00000006395 ortholog_one2one 2 retrogenes
retro_sscr_312, retro_sscr_313,
Tarsius syrichta ENSTSYG00000001645 ortholog_one2one 2 retrogenes
retro_tsyr_1911, retro_tsyr_950,
Tursiops truncatus ENSTTRG00000001814 ortholog_one2one 1 retrogene
retro_ttru_1614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3310 76.26 69.85
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2. retro_pabe_3364 94.97 89.95
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Download FASTA sequences of all ENSPPYG00000000648 retrocopies