RetrogeneDB ID: retro_mluc_1391

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429830:5208571..5209646(+)
• Located in intron of: ENSMLUG00000000516

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003345
• Aliases: None
• Description: None

Sequence

>retro_mluc_1391
GCATCCAGTCTGATAACCCGTGGAATTGAAGCTGTTGGTGGTAAATTAAGTGTGACTTCAACAAGGGAAAACATGGCCTA
CACTGTGGAATGCCTGCAGGATGACATGGAAATTCTAATGGAGTTCCTGCTCAGTGTCACCACAGCACCTGAGTTTGGTC
GTTGGGAGGTGGCTGCCCTTCGGTCCCAGCTGAGGATTGACAACGCTGTGGCTCTTCAGAACACACAGGCTCATATCATT
GGAAATCTGCATGCTGCAGCCTACCAAAATGCCTTGGCTAACTTCTTGTATTGTCCTGATTATAGGATTGGAAAAGTGAC
ACCAGATGAGTTACATCACTATGTTCAGAACCATTTTATAAGTGCAAGAATGGCTTTGGTTGGACTTGGTGTGAGTCATC
CTGTTCTGAAGCAAGTTGCTGAACAGTTTCTGAACATGAGGGGTGGGCTTGGTTTATCAGGTGCAAAGGCCAGATACATG
GAGGTGAAATTCGAGAGCAGAATGGAGACAGTCTCGTTCCTGCTGCCTTTGTAGCAGAAAGTGCTGCCACAGGAAGTGCA
GAAGCAAATGCATTTAGCATTCTCCAGCATGTCCTCAGCTCCGGACCACATGTCAAGCGGGGCAGCAATGCCACCAGCCC
TCTGTACCAAGCTGTTGCCAAGGGGACTCACCAGTCATTTGTTGTTTCTGCTTTTAATGTCAGTTACTTGGATTCTGGAC
TCTTTGGGATTTATACTATCTCCCAGGCTGCAGCTGCTGGAGATGTTATCAAGGCTGCCTACAACCAAGTCAAAGCAATT
GCTCAAGGAAACCTTTCCAGCCCAGATGTCCAGCTGCCAAGAACAGGCTGAAAGCTGGGTACCTAACGTCAGTGGAATCT
TCTGAAGGTTTCCTGGATGAAGTTGGGTCTCAGGCTCTCGCTGCTGGCTCGTATGTGCCACCATTCACAGGCCCTCAGCA
GATTGGCTCAATAGCTGATGCTGATGTCATAAATGCTACCAAGAAGTTTATTTCTGGCCAGAAGGCAATGGCAGCAAGTG
GAAATTTGGGGCATACACCTTTTGTTGGTGAGCTG

Alignment

ORF - retro_mluc_1391 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.36 %
• Parental protein coverage: 79.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDIEILMEFLLNVTTAPEFRRWEVAALQSQLRIDKAV
          .S..ITRGIEAVGGKLSVTSTRENMAYTVECL.DD.EILMEFLL.VTTAPEF.RWEVAAL.SQLRID.AV
Retrocopy ASSLITRGIEAVGGKLSVTSTRENMAYTVECLQDDMEILMEFLLSVTTAPEFGRWEVAALRSQLRIDNAV

Parental  ALQNPQAHIIENLHAAAYRNALANSLYCPDYRIGKVTPDELHHYVQNHFTSARMALVGLGEIGVSHPVLK
          ALQN.QAHII.NLHAAAY.NALAN.LYCPDYRIGKVTPDELHHYVQNHF.SARMALVGLG...VSHPVLK
Retrocopy ALQNTQAHIIGNLHAAAYQNALANFLYCPDYRIGKVTPDELHHYVQNHFISARMALVGLG---VSHPVLK

Parental  QVAERFLNMRGGLGLSGAKARY-RGGEIREQNGDSLVHAAFVAESAATGSAEANAFSVLQHVLGAGPHVK
          QVAE.FLNMRGGLGLSGAKARY..GGEIREQNGDSLV.AAFVAESAATGSAEANAFS.LQHVL..GPHVK
Retrocopy QVAEQFLNMRGGLGLSGAKARY<HGGEIREQNGDSLVPAAFVAESAATGSAEANAFSILQHVLSSGPHVK

Parental  RGSNATSSLYQAVAKGMHQPFDVSAFNASYSDSGLFGIYTISQAAAAGDVIKAAYNQVKAIAQGNLSSTD
          RGSNATS.LYQAVAKG.HQ.F.VSAFN.SY.DSGLFGIYTISQAAAAGDVIKAAYNQVKAIAQGNLSS.D
Retrocopy RGSNATSPLYQAVAKGTHQSFVVSAFNVSYLDSGLFGIYTISQAAAAGDVIKAAYNQVKAIAQGNLSSPD

Parental  VQ-AAKNKLKAGYLMSVESSEGFLDEIGSQALVAGSYVPPPTVLQQIDSVTDADVINAAKKFVSGQKSMA
          VQ.AAKN.LKAGYL.SVESSEGFLDE.GSQAL.AGSYVPP.T..QQI.S..DADVINA.KKF.SGQK.MA
Retrocopy VQ<AAKNRLKAGYLTSVESSEGFLDEVGSQALAAGSYVPPFTGPQQIGSIADADVINATKKFISGQKAMA

Parental  ASGNLGHTPFVDEL
          ASGNLGHTPFV.EL
Retrocopy ASGNLGHTPFVGEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1391 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 19 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021651	2 retrocopies	retro_btau_1008, retro_btau_1668,
Canis familiaris	ENSCAFG00000017756	1 retrocopy	retro_cfam_2075,
Callithrix jacchus	ENSCJAG00000009116	1 retrocopy	retro_cjac_222,
Echinops telfairi	ENSETEG00000001084	1 retrocopy	retro_etel_2087,
Homo sapiens	ENSG00000140740	1 retrocopy	retro_hsap_2785,
Gorilla gorilla	ENSGGOG00000015379	1 retrocopy	retro_ggor_1941,
Myotis lucifugus	ENSMLUG00000003345	2 retrocopies	retro_mluc_1391 , retro_mluc_770,
Macaca mulatta	ENSMMUG00000018287	2 retrocopies	retro_mmul_1442, retro_mmul_683,
Monodelphis domestica	ENSMODG00000007645	1 retrocopy	retro_mdom_327,
Mustela putorius furo	ENSMPUG00000016849	1 retrocopy	retro_mputfur_1042,
Nomascus leucogenys	ENSNLEG00000012185	1 retrocopy	retro_nleu_685,
Oryctolagus cuniculus	ENSOCUG00000003891	2 retrocopies	retro_ocun_604, retro_ocun_739,
Otolemur garnettii	ENSOGAG00000005478	4 retrocopies	retro_ogar_1113, retro_ogar_112, retro_ogar_1934, retro_ogar_82,
Ochotona princeps	ENSOPRG00000000419	1 retrocopy	retro_opri_455,
Pongo abelii	ENSPPYG00000007174	1 retrocopy	retro_pabe_2232,
Pan troglodytes	ENSPTRG00000007871	1 retrocopy	retro_ptro_1886,
Sorex araneus	ENSSARG00000010670	1 retrocopy	retro_sara_231,
Tupaia belangeri	ENSTBEG00000010785	1 retrocopy	retro_tbel_3988,
Vicugna pacos	ENSVPAG00000010914	1 retrocopy	retro_vpac_640,