RetrogeneDB ID:

retro_mluc_770

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429774:12001216..12002569(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000003345
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_770
ATGAAGCTGCCAGGCAGAGCCAGATCCTTCTCGAGATTTTATTCCCTCAAAGTTGCTCCCAAAGTGAAAGCCATGACTGC
TCCTGCAGGAGTGCCTGCACATCCTCAAGACCTTGAGTTTACCAAATTACCAAGCAGTTTAGTGATGGCTTCTTTGGAAA
ACCACGCTCCTCCATCAAGAACTGGTTTGTTTAAGAAAGCAGGCCGAAGGTGCGAGGACTCTAATAACTTAGGAACCTCC
CATTTGCTTCATCTTGCATCCAGTCTGACTACAAAAGGAGCACCATCTTTCAAGATAACCCCTGGAATTGAAGCCATTGG
TGGCAAATTAAGTGTGACTTCAACAAATTAAAACATGGCCTACACTGTGGAATGCCCGCTGGTGACATCAAAATTCTAAT
GGAGTTCCTGCTCAGTGTCACCGCAGCACCTAAATTTCATCATTGGGAGGTAGCTGTCCTTTAGTCTCAGCTAAGAATTG
ACAAACCTGTAGCTTTTCAGAATCCACAGGCTCATATTGAAAATGTGCATTCTACAATTTACCGAAATGTCTTAGCTAAT
TCCTTGTATTGTCCTGTTTGTAAGACTGGGAAAGTGACATCAGATGAGTTACATTACTATGTTCAGAACCATTTTACAAG
TGCAAGAATGGCTTTGATTGGACTTGGTGTGATTCACCCTGTACTGAAACAAGTTGCTGAATGATTTCTGAATATGAGGG
GTGGGCTTGGTTTACATAGTGCAAAGGCCAGATACCTTGGAGGTGAAATTTGAGAACACAGTGGAGACAGTCTTGTCCAT
GCTCCTTTTTGCAGCAGAAAGTGCTGCCACAGGAAGGGCAGAAGCAAATGCTTTTAGTGTTCTCCAGCATGTCCTCGGTG
CTGGGCCACCTGTCAAGAAGGACAGCAATGCCACCAGCCTTCTGTACCAAACTGTTGCCAAGAGGATTCACCAGCCATTT
GATGTTTTCGCTTTTTATGCCAGTTACTCAGATTCTCCACTCTTTGGGATTTATACTTTCTCCAAGGCTGCAGCTGCTGA
GACTTTATCAAGGCTGCCTACAACCAAGTAAAAGCAATTGATCAAGAAAACCTTTCTAGCACGGATGTCCAGGCTGCCAA
GAACAAGCTGAAAGATGGGTACCTAATGTCAGTGGAGTCTTCTGAAGGTTTCCTGGACGAAGGCAGGTCTCAGACTCTTG
CTACTGATTCGTACATGCCACCATCTAGTCTTTCAACCGATTGACTCAGTAGCTGATGCTGATGTCATAAATGCTGCAAA
GAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGCAAGTGGAAATTTGGGGCATACACCTTTTGTTGATGAGCTG

ORF - retro_mluc_770 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.91 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 4
Number of frameshifts detected: 4


Retrocopy - Parental Gene Alignment:

ParentalMKLLSGAGSFARFYSLKVAPKVKATPAPAGAPVHPQDLEFTKLPNGLVIASLENYAPASRIGLFVKAGSR
MKL...A.SF.RFYSLKVAPKVKA..APAG.P.HPQDLEFTKLP..LV.ASLEN.AP.SR.GLF.KAG.R
RetrocopyMKLPGRARSFSRFYSLKVAPKVKAMTAPAGVPAHPQDLEFTKLPSSLVMASLENHAPPSRTGLFKKAGRR
ParentalYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECL-RDDIEILMEFLLN
.EDSNNLGTSHLL.LASSLTTKGA.SFKIT.GIEA.GGKLSVTST..NMAYTVEC....DI.ILMEFLL.
RetrocopyCEDSNNLGTSHLLHLASSLTTKGAPSFKITPGIEAIGGKLSVTSTN*NMAYTVECP<AGDIKILMEFLLS
ParentalVTTAPEFRRWEVAALQSQLRIDKAVALQNPQAHIIENLHAAAYRNALANSLYCPDYRIGKVTPDELHHYV
VT.AP.F..WEVA.L.SQLRIDK.VA.QNPQAHI.EN.H...YRN.LANSLYCP....GKVT.DELH.YV
RetrocopyVTAAPKFHHWEVAVL*SQLRIDKPVAFQNPQAHI-ENVHSTIYRNVLANSLYCPVCKTGKVTSDELHYYV
ParentalQNHFTSARMALVGLGEIGVSHPVLKQVAERFLNMRGGLGLSGAKARYRGGEIREQNGDSLVHAAF-VAES
QNHFTSARMAL.GL...GV.HPVLKQVAE.FLNMRGGLGL..AKARY.GGEI.E..GDSLVHA.F..AES
RetrocopyQNHFTSARMALIGL---GVIHPVLKQVAE*FLNMRGGLGLHSAKARYLGGEI*EHSGDSLVHAPF>AAES
ParentalAATGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGMHQPFDVSAFNASYSDSGLFGIYTISQAA
AATG.AEANAFSVLQHVLGAGP.VK..SNATS.LYQ.VAK..HQPFDV.AF.ASYSDS.LFGIYT.S.AA
RetrocopyAATGRAEANAFSVLQHVLGAGPPVKKDSNATSLLYQTVAKRIHQPFDVFAFYASYSDSPLFGIYTFSKAA
ParentalAAG-DVIKAAYNQVKAIAQGNLSSTDVQAAKNKLKAGYLMSVESSEGFLDEIGSQALVAGSYVPPPT-VL
AA..D.IKAAYNQVKAI.Q.NLSSTDVQAAKNKLK.GYLMSVESSEGFLDE..SQ.L...SY.P.P..V.
RetrocopyAAE<DFIKAAYNQVKAIDQENLSSTDVQAAKNKLKDGYLMSVESSEGFLDEGRSQTLATDSYMP-PS>VF
ParentalQQIDSVTDADVINAAKKFVSGQKSMAASGNLGHTPFVDEL
Q.IDSV.DADVINAAKKFVSGQKSMAASGNLGHTPFVDEL
RetrocopyQPIDSVADADVINAAKKFVSGQKSMAASGNLGHTPFVDEL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_770 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000216512 retrocopies
retro_btau_1008, retro_btau_1668,
Canis familiaris ENSCAFG000000177561 retrocopy
retro_cfam_2075,
Callithrix jacchus ENSCJAG000000091161 retrocopy
retro_cjac_222,
Echinops telfairi ENSETEG000000010841 retrocopy
retro_etel_2087,
Homo sapiens ENSG000001407401 retrocopy
retro_hsap_2785,
Gorilla gorilla ENSGGOG000000153791 retrocopy
retro_ggor_1941,
Myotis lucifugus ENSMLUG00000003345 2 retrocopies
retro_mluc_1391, retro_mluc_770 ,
Macaca mulatta ENSMMUG000000182872 retrocopies
retro_mmul_1442, retro_mmul_683,
Monodelphis domestica ENSMODG000000076451 retrocopy
retro_mdom_327,
Mustela putorius furoENSMPUG000000168491 retrocopy
retro_mputfur_1042,
Nomascus leucogenys ENSNLEG000000121851 retrocopy
retro_nleu_685,
Oryctolagus cuniculus ENSOCUG000000038912 retrocopies
retro_ocun_604, retro_ocun_739,
Otolemur garnettii ENSOGAG000000054784 retrocopies
retro_ogar_1113, retro_ogar_112, retro_ogar_1934, retro_ogar_82,
Ochotona princeps ENSOPRG000000004191 retrocopy
retro_opri_455,
Pongo abelii ENSPPYG000000071741 retrocopy
retro_pabe_2232,
Pan troglodytes ENSPTRG000000078711 retrocopy
retro_ptro_1886,
Sorex araneus ENSSARG000000106701 retrocopy
retro_sara_231,
Tupaia belangeri ENSTBEG000000107851 retrocopy
retro_tbel_3988,
Vicugna pacos ENSVPAG000000109141 retrocopy
retro_vpac_640,


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