RetrogeneDB ID: retro_mluc_1841

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429927:212055..212352(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AP4S1
• Ensembl ID: ENSMLUG00000011671
• Aliases: None
• Description: None

Sequence

>retro_mluc_1841
CAGTGCTCTTTCACTGAATATAAGGATTTTAAGCTGGTATATCAGCAGTATGCAGCTCTCTTCATTGTGGTTGGAATTAA
TGACACCAAGGATGAGATGGCGATTTATGAATTCACCCATAACTATGTGGAAATTTTAGATGAGTACTTCAGCCAAGTGA
GTGAATTAGATATAATGTTTAATTTGGATAACATACACCTCATTTTGGATGAGAAGATATTAAATGGCTGCATTGTAGAA
ACAAATCGGGCAAGAATTCTTGCCCCTCTACCAATTCTTGATAAGATGTCAGAAAGT

Alignment

ORF - retro_mluc_1841 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.84 %
• Parental protein coverage: 68.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QCSFVEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILD
          QCSF.EYKDFKL.Y.QYAALFIVVG.NDT..EMAIYEF.HN.VE.LDEYFS.VSELDIMFNLD..H.ILD
Retrocopy QCSFTEYKDFKLVYQQYAALFIVVGINDTKDEMAIYEFTHNYVEILDEYFSQVSELDIMFNLDNIHLILD

Parental  EMLLNGCIVETNRARILAPLLILDKMSES
          E..LNGCIVETNRARILAPL.ILDKMSES
Retrocopy EKILNGCIVETNRARILAPLPILDKMSES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1841 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009898	2 retrocopies	retro_mluc_1493, retro_mluc_2061,
Myotis lucifugus	ENSMLUG00000011671	1 retrocopy	retro_mluc_1841 ,
Macaca mulatta	ENSMMUG00000003123	1 retrocopy	retro_mmul_17,
Monodelphis domestica	ENSMODG00000017579	1 retrocopy	retro_mdom_1774,
Ornithorhynchus anatinus	ENSOANG00000014031	1 retrocopy	retro_oana_60,
Pongo abelii	ENSPPYG00000005723	1 retrocopy	retro_pabe_2889,
Rattus norvegicus	ENSRNOG00000005765	1 retrocopy	retro_rnor_2200,