Parental gene:

AP4S1, ENSMODG00000017579

Aliases:None
Description:adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:208292590..208354124(-)


>ENSMODG00000017579
ATGATAAAATTTTTCCTCATGGTGAATAAACAAGGACAAACTAGACTTTCTAGATATTATGAACATGTGGAAATCAATAA
GAGAACCATTCTAGAAGCAGATGTCATCAAAACATGCTTAACTCGGTCCAAGGAACAATGCTCTTTTATCGAGTACAAGG
ATTTTAAGCTCATCTACCGGCAGTACGCAGCTCTCTTCATCGTGGTGGGCATCAATGACACTGAGAATGAAATGGCTGTC
TATGAATTCATCCATAATTTTGTGGAAGTTTTGGACATGTATTTCAGCCGAGTGAGTGAATTAGATATAATGTTTAACTT
GGATAAAGTGCACATAATTTTGGATGAGATGGTGCTGAATGGCTGCATTGTGGAAACTAATAAGGCTCGAATCCTCGCTC
CTCTCCTGATTCTTGACAAAATGGCAGAGAGCTGA

Library Parental gene expression (RPM)
SRP007412_brain 20 .03 RPM
SRP007412_cerebellum 29 .71 RPM
SRP007412_heart 23 .52 RPM
SRP007412_kidney 38 .19 RPM
SRP007412_liver 36 .25 RPM
SRP007412_testis 8 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013301 ortholog_one2one 4 retrogenes
retro_chof_2345, retro_chof_2677, retro_chof_393, retro_chof_820,
Callithrix jacchus ENSCJAG00000005786 ortholog_one2one 1 retrogene
retro_cjac_2742,
Dipodomys ordii ENSDORG00000009468 ortholog_one2one 1 retrogene
retro_dord_595,
Erinaceus europaeus ENSEEUG00000013009 ortholog_one2one 1 retrogene
retro_eeur_301,
Homo sapiens ENSG00000100478 ortholog_one2one 1 retrogene
retro_hsap_3496,
Gorilla gorilla ENSGGOG00000003198 ortholog_one2one 1 retrogene
retro_ggor_2363,
Myotis lucifugus ENSMLUG00000011671 ortholog_one2one 1 retrogene
retro_mluc_1841,
Macaca mulatta ENSMMUG00000003123 ortholog_one2many 1 retrogene
retro_mmul_17,
Monodelphis domestica ENSMODG00000017197 within_species_paralog 7 retrogenes
retro_mdom_1189, retro_mdom_1329, retro_mdom_1441, retro_mdom_1470, retro_mdom_1616, retro_mdom_1987, retro_mdom_903,
Monodelphis domestica ENSMODG00000021198 within_species_paralog 1 retrogene
retro_mdom_1427,
Nomascus leucogenys ENSNLEG00000015901 ortholog_one2one 1 retrogene
retro_nleu_788,
Ornithorhynchus anatinus ENSOANG00000014031 ortholog_one2one 1 retrogene
retro_oana_60,
Pongo abelii ENSPPYG00000005723 ortholog_one2many 1 retrogene
retro_pabe_2889,
Pan troglodytes ENSPTRG00000006239 ortholog_one2one 1 retrogene
retro_ptro_2368,
Pteropus vampyrus ENSPVAG00000017161 ortholog_one2one 1 retrogene
retro_pvam_1455,
Rattus norvegicus ENSRNOG00000005765 ortholog_one2one 1 retrogene
retro_rnor_2200,
Ictidomys tridecemlineatus ENSSTOG00000010759 ortholog_one2one 1 retrogene
retro_itri_1050,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1774 57.45 63.89
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Download FASTA sequences of all ENSMODG00000017579 retrocopies