RetrogeneDB ID:

retro_mluc_2075

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430014:877219..878246(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000005472
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM185A
Ensembl ID:ENSMLUG00000001319
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2075
GACTTCAACCCGAGTAAGTTCCTCATCTACGCCTGCCTGCTGCTCTTCTCCGTGCTGCTGCCCCTTCCGCTGGATGGCGT
CATCCAGTGGAGCTACTGGGCTGTCTTCGCCCCCATCTGGCTGTGGAAGCTCCTGGTCATGGCGGGCGCCTTCCGTGGGT
GCGGGCGTTTGGGCCCGAAACCCTCGCTACCGCACCGAGGGCGAGACCTGCGTGGAGTTCAAGGCCATGCTGATCGCCGT
GGGCATCCACCTGCTGCTGCTCATGTTCGAAGTCCTGGTCTGCGACCGGGTGGAGCGGGGGACACACTTCTGGCTGCTGG
TCTTCATGCCGCTCTTCTTCGTCTCCCCCGTGTCCGTGGCGGCCTGCGTGTGGGGCTTCCGACACGATCGGTCCCTGGAG
CTGGAGATCCTGTGCTCCGTCAACATCCTGCAGTTCATCTTCATCGCCCTGCGGCTGGACAGGATCATCCACTGGCCGTG
GCTGGTGGTCTTCGTGCCCCTCTGGATCCTCATGTCCTTCCTCTGCCTGGTCGTCCTCTATTACATCGTCTGGTCCCTCC
TGTTCCTGCGGTCCCTGGACGTGGTGGCCGAGCAGCGGAGAACGCACGTGACCATGGCCATCAGCTGGATCACCATCGTC
GTGCCCCTGCTCACCTTTGAGGTCCTGCTGGTTCACAGACTGGATGGCCACAATACTTTCTCCTACATCTCCATCTTCGT
CCCCCTCTGGCTTTCCTTAATCACTCTGATGGCCACCACCTTCAGGCGAAAAGGGGGCAACCACTGGTGGTTTGGTATTC
GCAGAGATTTCTGTCAGTTTCTGCTTGAAATTTTCCCGTTTTTGAGAGAATACGGGAACATTTCCTATGATCTGCATCAT
GAAGACAGTGAAGATATTGAAGAAACATCGGTTCCAGATGCGCCTAAAATTGCTCCAATATTTGGGAAGAAAGCCAGGGT
AGTTATAACCCAGAGCCCTGGAAAGTATGTTCCCCCACCTCCCAAGTTAAATATTGATATGCCAGAT

ORF - retro_mluc_2075 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.76 %
Parental protein coverage: 97.71 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDFSPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIIGA-SVGTGVWARNPQYRAEGET
DF.PSKFLIYACLLLFSVLL.L.LDG.IQWSYWAVFAPIWLWKL.V..GA.SVG.GVWARNP.YR.EGET
RetrocopyDFNPSKFLIYACLLLFSVLLPLPLDGVIQWSYWAVFAPIWLWKLLVMAGA>SVGAGVWARNPRYRTEGET
ParentalCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS
CVEFKAMLIAVGIHLLLLMFEVLVCDR.ERG.HFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS
RetrocopyCVEFKAMLIAVGIHLLLLMFEVLVCDRVERGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS
ParentalVNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTHITMALSW
VNILQFIFIALRLD.IIHWPWLVV.VPLWILMSFLCLVVLYYIVWS.LFLRS.DV.AEQRRTH.TMA.SW
RetrocopyVNILQFIFIALRLDRIIHWPWLVVFVPLWILMSFLCLVVLYYIVWSLLFLRSLDVVAEQRRTHVTMAISW
ParentalMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEIFP
.TIVVPLLTFE.LLVH.LDGHN.FS.I.IFVPLWLSLITLMATTF..KGGNHWWFGIR.DFCQFLLEIFP
RetrocopyITIVVPLLTFEVLLVHRLDGHNTFSYISIFVPLWLSLITLMATTFRRKGGNHWWFGIRRDFCQFLLEIFP
ParentalFLREYGNISYDIHHEDNEETEETPVPEPPKIAPLFRKKTRVVITQSPGKYILPPPKLNIEMPD
FLREYGNISYD.HHED.E..EET.VP..PKIAP.F.KK.RVVITQSPGKY..PPPKLNI.MPD
RetrocopyFLREYGNISYDLHHEDSEDIEETSVPDAPKIAPIFGKKARVVITQSPGKYVPPPPKLNIDMPD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_2075 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 22 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000086371 retrocopy
retro_acar_65,
Ailuropoda melanoleuca ENSAMEG000000093511 retrocopy
retro_amel_8,
Cavia porcellus ENSCPOG000000036221 retrocopy
retro_cpor_5,
Dasypus novemcinctus ENSDNOG000000118641 retrocopy
retro_dnov_2451,
Dipodomys ordii ENSDORG000000150271 retrocopy
retro_dord_67,
Equus caballus ENSECAG000000093991 retrocopy
retro_ecab_426,
Homo sapiens ENSG000001559841 retrocopy
retro_hsap_104,
Gorilla gorilla ENSGGOG000000242681 retrocopy
retro_ggor_189,
Loxodonta africana ENSLAFG000000030441 retrocopy
retro_lafr_898,
Microcebus murinus ENSMICG000000046391 retrocopy
retro_mmur_106,
Myotis lucifugus ENSMLUG00000001319 1 retrocopy
retro_mluc_2075 ,
Macaca mulatta ENSMMUG000000028881 retrocopy
retro_mmul_310,
Mustela putorius furoENSMPUG000000118961 retrocopy
retro_mputfur_46,
Mus musculus ENSMUSG000000731391 retrocopy
retro_mmus_358,
Nomascus leucogenys ENSNLEG000000134871 retrocopy
retro_nleu_2723,
Otolemur garnettii ENSOGAG000000164141 retrocopy
retro_ogar_88,
Pongo abelii ENSPPYG000000208091 retrocopy
retro_pabe_118,
Pteropus vampyrus ENSPVAG000000138221 retrocopy
retro_pvam_30,
Rattus norvegicus ENSRNOG000000110471 retrocopy
retro_rnor_6,
Sus scrofa ENSSSCG000000127391 retrocopy
retro_sscr_494,
Ictidomys tridecemlineatus ENSSTOG000000144841 retrocopy
retro_itri_8,
Tursiops truncatus ENSTTRG000000006431 retrocopy
retro_ttru_868,


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