RetrogeneDB ID: | retro_itri_8 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393279.1:50303975..50305028(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020073 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM185A | ||
Ensembl ID: | ENSSTOG00000014484 | ||
Aliases: | None | ||
Description: | transmembrane protein 185A [Source:HGNC Symbol;Acc:17125] |
Percent Identity: | 86.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | INIKKIFFYFSPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQ |
.N....F..F.PSKFLIYACLLLFSVLL.LRLDGIIQWSYWAVFAPIWLWKL.VI.GASVG.GVWARNP. | |
Retrocopy | MNPRGLFQDFNPSKFLIYACLLLFSVLLPLRLDGIIQWSYWAVFAPIWLWKLLVISGASVGAGVWARNPR |
Parental | YRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSL |
YR.EGE.CVEFKAMLIAVGIHLLLLMFEVLVCDR.ERG.HFWLLVFMPLFFVSPVSVAACVWGFRHDRSL | |
Retrocopy | YRTEGEACVEFKAMLIAVGIHLLLLMFEVLVCDRVERGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSL |
Parental | ELEILCSVNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTH |
ELEILCSVNILQFIFIALRLD.IIHWPWLVV.VPLWILMSFLCLVVLYYIVWS.LFLRS.DV.AEQRRTH | |
Retrocopy | ELEILCSVNILQFIFIALRLDRIIHWPWLVVFVPLWILMSFLCLVVLYYIVWSLLFLRSLDVVAEQRRTH |
Parental | ITMALSWMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHCTYSV |
.TMA.SW.TIVVPLLTFE.LLVH.LDGHN.FS.I.IF.PLWLSLITLMATTF..KGGNH..... | |
Retrocopy | VTMAISWITIVVPLLTFEVLLVHRLDGHNTFSYISIFIPLWLSLITLMATTFRRKGGNHWWFGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |