RetrogeneDB ID: | retro_sscr_494 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 15:36618258..36619287(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000025461 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM185A | ||
Ensembl ID: | ENSSSCG00000012739 | ||
Aliases: | None | ||
Description: | transmembrane protein 185A [Source:HGNC Symbol;Acc:17125] |
Percent Identity: | 87.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DFSPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQYRAEGETC |
DF.PSKFLIYACLLLFSVLL.LRLDG.IQWSYWAVFAPIWLWKL.V..GASVG.GVWARNP.YR.EGE.C | |
Retrocopy | DFNPSKFLIYACLLLFSVLLPLRLDGVIQWSYWAVFAPIWLWKLLVLAGASVGAGVWARNPRYRTEGEAC |
Parental | VEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCSV |
VEFKAMLIAVGIHLLLLMFEVLVCDR.ERG.HFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCSV | |
Retrocopy | VEFKAMLIAVGIHLLLLMFEVLVCDRVERGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCSV |
Parental | NILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVLAEQRRTHITMALSWM |
NILQFIFIALRLD.IIHWPWLVV.VPLWILMSFLCLVVLYYIVWS.LFLRS.DV.AEQRRTH.TMA.SW. | |
Retrocopy | NILQFIFIALRLDRIIHWPWLVVFVPLWILMSFLCLVVLYYIVWSLLFLRSLDVVAEQRRTHVTMAISWI |
Parental | TIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEVFPF |
TIVVPLLTFE.LLVH.LDGHN.FS...IFVPLWLSLITLM.TTF..KGGNHWWFGIR.DFCQFLLE..P. | |
Retrocopy | TIVVPLLTFEVLLVHRLDGHNVFSYVSIFVPLWLSLITLMTTTFRRKGGNHWWFGIRRDFCQFLLEICPC |
Parental | LREYGNISYDLHHEENEETEET-PVPEPPKIAPMFRKKARVVITQSPGKYVLPPPKLNIEMPD |
LREYGNISYDLHHE..E..EET..VPE.PKIAPMF.KKARVVITQSPGKYV.PPPKLNI.MPD | |
Retrocopy | LREYGNISYDLHHEDSEDAEETSSVPEAPKIAPMFGKKARVVITQSPGKYVPPPPKLNIDMPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 11 .41 RPM | 63 .58 RPM |
SRP014902_testis | 12 .16 RPM | 31 .26 RPM |
SRP018288_heart | 5 .19 RPM | 10 .19 RPM |
SRP018288_kidney | 3 .64 RPM | 14 .58 RPM |
SRP018288_liver | 3 .36 RPM | 4 .16 RPM |
SRP018288_lung | 5 .50 RPM | 18 .23 RPM |
SRP018856_adipose | 16 .96 RPM | 60 .21 RPM |
SRP035408_brain | 5 .11 RPM | 13 .72 RPM |
SRP035408_liver | 2 .00 RPM | 3 .38 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1 |
Equus caballus | retro_ecab_426 |