RetrogeneDB ID: retro_mluc_2347

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430233:281176..281749(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRDX4
• Ensembl ID: ENSMLUG00000004904
• Aliases: None
• Description: None

Sequence

>retro_mluc_2347
GTTTCCAAGCCAGCACCTTATTGGGAAGGAACCGCTGTGATAAATGGAGACTTTAAGGAGCTCAAGTTAACTGATTATCG
TGGAAAATACCTGGTTTTCTTCTTCTACCCACTTGATTTCACTTTTGTGTGTCCAACTGAAATTATCGCCTTCAGTGATA
GAATTGAAGAATTCAGATCCATAAACACGGAAGTGGTGGCATGCTCTGTCGATTCACAGTTCGCCCACTTGGCCTGGATT
AACACCCCTAGAAGGCAAGGAGGACTTGGGCCAATAAAGATTCCACTTCTTTCAGATTTGACCCATCAGATCGCAAAGGA
CTATGGCGTGTATCTGGAAGACTCGGGCCACAGTCTTAGAGGTCTCTTCATTATCGATGACAAGGGGATCCTAAGACAGA
TGACTCTGAATGACCTTCCTGTGGGTAGATCGGTGGATGAGACACTGCGTTTGGTCCAAGCATTCCAGTACACCGCTAAA
CATGGAGAAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAACAATAATTCCGGATCCAGCTGGAAAACTGAAGTATTT
TGACAAACTGAAC

Alignment

ORF - retro_mluc_2347 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.81 %
• Parental protein coverage: 78.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ISKPAPYWEGTAVINGEFKELKLTDYHGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRSINTEVVACSV
          .SKPAPYWEGTAVING.FKELKLTDY.GKYLVFFFYPLDFTFVCPTEIIAF.DRIEEFRSINTEVVACSV
Retrocopy VSKPAPYWEGTAVINGDFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRSINTEVVACSV

Parental  DSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQIAKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLP
          DSQF.HLAWINTPRRQGGLGPIKIPLLSDLTHQIAKDYGVYLEDSGH.LRGLFIIDDKGILRQ.TLNDLP
Retrocopy DSQFAHLAWINTPRRQGGLGPIKIPLLSDLTHQIAKDYGVYLEDSGHSLRGLFIIDDKGILRQMTLNDLP

Parental  VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
          VGRSVDETLRLVQAFQYT.KHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
Retrocopy VGRSVDETLRLVQAFQYTAKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2347 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006165	1 retrocopy	retro_btau_439,
Cavia porcellus	ENSCPOG00000004185	1 retrocopy	retro_cpor_353,
Equus caballus	ENSECAG00000010085	1 retrocopy	retro_ecab_576,
Homo sapiens	ENSG00000123131	1 retrocopy	retro_hsap_3165,
Gorilla gorilla	ENSGGOG00000026790	1 retrocopy	retro_ggor_1351,
Myotis lucifugus	ENSMLUG00000004904	2 retrocopies	retro_mluc_2347 , retro_mluc_2619,
Myotis lucifugus	ENSMLUG00000012871	3 retrocopies	retro_mluc_1203, retro_mluc_1522, retro_mluc_2069,
Macaca mulatta	ENSMMUG00000021366	1 retrocopy	retro_mmul_2001,
Tupaia belangeri	ENSTBEG00000004454	5 retrocopies	retro_tbel_2164, retro_tbel_2467, retro_tbel_2522, retro_tbel_2811, retro_tbel_2978,
Tarsius syrichta	ENSTSYG00000000602	1 retrocopy	retro_tsyr_404,
Tursiops truncatus	ENSTTRG00000012368	1 retrocopy	retro_ttru_547,