RetrogeneDB ID: | retro_tbel_2811 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_119693:172478..172949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX4 | ||
Ensembl ID: | ENSTBEG00000004454 | ||
Aliases: | None | ||
Description: | peroxiredoxin 4 [Source:HGNC Symbol;Acc:17169] |
Percent Identity: | 60.38 % |
Parental protein coverage: | 96.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | APYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRSINTEVVACSVDSQF |
APY..G.AV..GEFK.L.L.D..GKYLV.FFYPLDFTFVCPTEI..F.D...EF...N.EV.A.SV.SQF | |
Retrocopy | APYFKGIAVVKGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEITVFSDKVNEFHDVNYEVIAVSVNSQF |
Parental | THLAWINTPRRQGGLGPIK-IPLLSDLTHQISKDYGVYLEDSGHTLRG-LFIIDDKGILRQITLNDLPVG |
.HLAWINT.R..GGLG....I.LLSD.T.QIS.DY.V.LE.....LRG..FIID..GI......NDLPVG | |
Retrocopy | SHLAWINTSRKNGGLGHMR>IALLSDSTKQISLDYNVLLEGPVLVLRG<SFIIDSNGIIKHLSVNDLPVG |
Parental | RSVDETLRLVQAFQYTDKH |
.SV.ETL.L..A.Q....H | |
Retrocopy | PSVLETLHLMKASQFVESH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006165 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004185 | 1 retrocopy | |
Equus caballus | ENSECAG00000010085 | 1 retrocopy | |
Homo sapiens | ENSG00000123131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026790 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004904 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021366 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004454 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000011064 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000015997 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000602 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012368 | 1 retrocopy |