RetrogeneDB ID: | retro_mluc_2619 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL432135:1041..1614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX4 | ||
Ensembl ID: | ENSMLUG00000004904 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.29 % |
Parental protein coverage: | 78.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ISKPAPYWEGTAVINGEFKELKLTDYHGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRSINTEVVACSV |
.SKPAPYWEGTAVING.FKELKLTDY.GKYLVFFFYPLDFTFVCPTEIIAF.DRIEEFRSINTEVVACSV | |
Retrocopy | VSKPAPYWEGTAVINGDFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRSINTEVVACSV |
Parental | DSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQIAKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLP |
DSQF.HLAWINTPRRQGGLGPIKIPLLSDLTHQ.AKDYGVYLEDSGH.LRGLFIIDDKGILRQ.TLNDLP | |
Retrocopy | DSQFAHLAWINTPRRQGGLGPIKIPLLSDLTHQVAKDYGVYLEDSGHSLRGLFIIDDKGILRQMTLNDLP |
Parental | VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN |
VGRSVDETLRLVQAFQYT.KHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN | |
Retrocopy | VGRSVDETLRLVQAFQYTAKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006165 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004185 | 1 retrocopy | |
Equus caballus | ENSECAG00000010085 | 1 retrocopy | |
Homo sapiens | ENSG00000123131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026790 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004904 | 2 retrocopies |
retro_mluc_2347, retro_mluc_2619 ,
|
Myotis lucifugus | ENSMLUG00000012871 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000021366 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004454 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000602 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012368 | 1 retrocopy |