RetrogeneDB ID: | retro_tbel_2164 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_102986:6374..6712(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX4 | ||
Ensembl ID: | ENSTBEG00000004454 | ||
Aliases: | None | ||
Description: | peroxiredoxin 4 [Source:HGNC Symbol;Acc:17169] |
Percent Identity: | 54.24 % |
Parental protein coverage: | 72.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRSINTEVVACSVDSQFT |
P....TAV..GEFK.....D..G.YL..FF.P.DFTFV.PTE.IAF.D...EF...N.EVVA.SVDS... | |
Retrocopy | PCFISTAVVKGEFKD----DCKGNYLGLFFFPSDFTFVHPTEMIAFSDQANEFHVVNCEVVAISVDSHCS |
Parental | HLAWINTPRRQGGLG-PIKIPLLSDLTHQISKDYGVYLEDSGHTLRGL |
HLA.INTPRR.GGL..P....LLSD.T...S.D.GV.LE......R.L | |
Retrocopy | HLARINTPRRNGGLS<PVTMALLSDSTKHSSQDDGVLLEGPALVQRSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006165 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004185 | 1 retrocopy | |
Equus caballus | ENSECAG00000010085 | 1 retrocopy | |
Homo sapiens | ENSG00000123131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026790 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004904 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021366 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004454 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000011064 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000015997 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000602 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012368 | 1 retrocopy |