RetrogeneDB ID: | retro_mluc_1126 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429797:4268167..4268718(+) | ||
Located in intron of: | ENSMLUG00000008152 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSMLUG00000016606 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL |
M.EYKL.VLGSGG.GKSAL.VQFVQGIFVEKYDP.IEDSYRKQVEVDAQQCMLEILDT.GTEQFTAMRDL | |
Retrocopy | MYEYKLAVLGSGGIGKSALIVQFVQGIFVEKYDPMIEDSYRKQVEVDAQQCMLEILDTVGTEQFTAMRDL |
Parental | YMKNGQGFALVYSIT-AQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWN |
YMKNGQGFALVYSIT..QSTFNDLQDLREQILRVKDTDDVP.ILVGNKCDLEDERVVGKEQGQNL.RQWN | |
Retrocopy | YMKNGQGFALVYSIT<RQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLTRQWN |
Parental | NCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL |
NCAFLESSAKSKINVNE.FYDLV.QINRKT...G...KKS.CQLL | |
Retrocopy | NCAFLESSAKSKINVNELFYDLVGQINRKTHGLGRPTKKS*CQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000001086 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Homo sapiens | ENSG00000127314 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010571 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000016606 | 2 retrocopies |
retro_mluc_1126 , retro_mluc_2211,
|
Myotis lucifugus | ENSMLUG00000022354 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007323 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000010977 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015712 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000931 | 2 retrocopies |