RetrogeneDB ID:

retro_mluc_2312

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430193:76330..76881(+)
Located in intron of:ENSMLUG00000027170
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAP1A
Ensembl ID:ENSMLUG00000010571
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2312
ATGGGTGAGTACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTGGGGAAGTCTGCTCTGACAGTTCAGTTTGTTCAGGGAAT
TTTTGCTGAAAACTATGACCCAATGGCAGAAGATTCCTACAGAAAGCAAGTGGAAGTAGATTGCCAACAGTGTATGCTCG
AAATCCTGGACACGGCAGGAACAGGGCAATTTACAGCGATGAGGGATTTGTATATGAAGAATGGCCAAGGGTTTGCACTA
GTATATTCTCTTACAGCTCAGTCCACATTTAATGACTTACAGGACCCAAGGGAACAGATTTTACGGGTTAAGGACACAGA
AGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAGCGAGTAGTTGGCAAAGAACAGGGTCAGAATT
TAGCAAGACAGTGTGTAACTGTGCCTTTTTAGAATCTTCTGCAAAGTCAAAGATCAACGTTAATGGGATATTTCATGACC
TGGTCAGGCAGATCAATAGAAAGACACCAGTGGCAAAGAAGAAGCCTAAAAAGAAACCCTGTCTGCTGCTT

ORF - retro_mluc_2312 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.89 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL
M.EYKLVVLGSGGVGKSALTVQFVQGIF.E.YDP..EDSYRKQVEVDCQQCMLEILDTAGT.QFTAMRDL
RetrocopyMGEYKLVVLGSGGVGKSALTVQFVQGIFAENYDPMAEDSYRKQVEVDCQQCMLEILDTAGTGQFTAMRDL
ParentalYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-C
YMKNGQGFALVYS.TAQSTFNDLQD.REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ..C
RetrocopyYMKNGQGFALVYSLTAQSTFNDLQDPREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQC<C
ParentalNCAFLESSAKSKINVNEIFYDLVRQINRKTPVERKKPKKKSCLLL
NCAFLESSAKSKINVN.IF.DLVRQINRKTPV..KKPKKK.CLLL
RetrocopyNCAFLESSAKSKINVNGIFHDLVRQINRKTPVAKKKPKKKPCLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2312 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 45 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000053841 retrocopy
Canis familiaris ENSCAFG000000136861 retrocopy
Callithrix jacchus ENSCJAG000000133927 retrocopies
Dasypus novemcinctus ENSDNOG000000078095 retrocopies
Equus caballus ENSECAG000000164341 retrocopy
Erinaceus europaeus ENSEEUG000000104462 retrocopies
Echinops telfairi ENSETEG000000168932 retrocopies
Homo sapiens ENSG000001164731 retrocopy
Myotis lucifugus ENSMLUG00000010571 3 retrocopies
retro_mluc_2311, retro_mluc_2312 , retro_mluc_2313,
Myotis lucifugus ENSMLUG000000166062 retrocopies
Myotis lucifugus ENSMLUG000000223541 retrocopy
Monodelphis domestica ENSMODG000000013233 retrocopies
Mus musculus ENSMUSG000000687982 retrocopies
Nomascus leucogenys ENSNLEG000000040181 retrocopy
Ochotona princeps ENSOPRG000000039993 retrocopies
Pongo abelii ENSPPYG000000010281 retrocopy
Pan troglodytes ENSPTRG000000011021 retrocopy
Rattus norvegicus ENSRNOG000000324633 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000278471 retrocopy
Tarsius syrichta ENSTSYG000000045213 retrocopies
Vicugna pacos ENSVPAG000000100331 retrocopy



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