RetrogeneDB ID: | retro_mluc_2211 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430106:762379..762890(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSMLUG00000016606 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.88 % |
Parental protein coverage: | 94.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDA-QQCMLEI-LDTAGTEQFTAMRD |
REYKLVVLGSGGVGKSALT.QFVQG.FVEKYDPTI.DSY.K.VE.D...QC.LEI.LD..GTEQFTA.RD | |
Retrocopy | REYKLVVLGSGGVGKSALTAQFVQGFFVEKYDPTI-DSYTKEVEADV<AQCVLEI<LDAEGTEQFTATRD |
Parental | LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWN |
.YM.N.QGFA.VYSITA.STF..LQ....QI..V.D.DDVP.IL..NKCD..D.RV.GKE.GQNLARQWN | |
Retrocopy | -YMDNRQGFAVVYSITARSTFKELQGMGGQIFLVTDIDDVPVILFSNKCDAADKRVAGKERGQNLARQWN |
Parental | NCAFL-ESSAKSKINVNEIFYDLVRQINRKTPV-PGK |
N..FL..SSAK.KI.V..IFYDLV..INRKTPV.PGK | |
Retrocopy | NSTFL>KSSAK*KIKVRKIFYDLVQEINRKTPV<PGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000001086 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Homo sapiens | ENSG00000127314 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010571 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000016606 | 2 retrocopies |
retro_mluc_1126, retro_mluc_2211 ,
|
Myotis lucifugus | ENSMLUG00000022354 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007323 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000010977 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015712 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000931 | 2 retrocopies |