RetrogeneDB ID: | retro_mmul_1456 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:111783726..111784292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B2 | ||
Ensembl ID: | ENSMMUG00000001054 | ||
Aliases: | None | ||
Description: | elongation factor 1-beta [Source:RefSeq peptide;Acc:NP_001253314] |
Percent Identity: | 73.06 % |
Parental protein coverage: | 84.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSYEK-EKASL |
MGF.DLKSPAGL.VLN.YLADKSYIEGYVPS.ADVAV.E.V.GP.P..LC.AL.WY.H.KS.EK.EKASL | |
Retrocopy | MGFRDLKSPAGLHVLNNYLADKSYIEGYVPS*ADVAVLETVTGPLPVNLCLALCWYSHVKSHEK<EKASL |
Parental | PGVKKALGKYGPADVEDTTGSGATDSKDDDD-IDLFGSDDEEESEEAKRLREERLAQYES-KKAKKPALV |
PGVKK.LGKY.PA.VEDTTGSGAT.SKDDD..IDL.GSD.E.ESE.AKRL.EE.LAQ.ES..K.K...L. | |
Retrocopy | PGVKKPLGKYAPANVEDTTGSGATSSKDDDI<IDLLGSDKEDESEAAKRLMEEWLAQNES>RKPKNVHLL |
Parental | AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQ |
...SI.LDVK.WDD..DMAKLEECVRSIQ..GLV.GSSKLV....GI..LQIQ | |
Retrocopy | P-FSIVLDVKQWDDVADMAKLEECVRSIQTNGLV*GSSKLVMMANGI*ILQIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 59 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 53 .94 RPM |
SRP007412_cerebellum | 0 .06 RPM | 50 .24 RPM |
SRP007412_heart | 0 .00 RPM | 79 .61 RPM |
SRP007412_kidney | 0 .12 RPM | 94 .95 RPM |
SRP007412_liver | 0 .00 RPM | 123 .07 RPM |
SRP007412_testis | 0 .00 RPM | 46 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2883 |
Gorilla gorilla | retro_ggor_2000 |
Pongo abelii | retro_pabe_2389 |