RetrogeneDB ID: | retro_mmul_1780 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:96046421..96046793(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022847 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2032 | ||
Ensembl ID: | ENSMMUG00000005689 | ||
Aliases: | None | ||
Description: | peroxiredoxin-2 [Source:RefSeq peptide;Acc:NP_001248186] |
Percent Identity: | 77.42 % |
Parental protein coverage: | 62.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGC |
MAS..A..G..APDF.ATAVVDG.FKEVKLSD.K.KYVVLFFYPL.FTFVCPTEII.FS..AEDF.KLGC | |
Retrocopy | MASVIACMG*SAPDFNATAVVDGTFKEVKLSDFKEKYVVLFFYPLHFTFVCPTEIITFSDHAEDFCKLGC |
Parental | EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI |
.VLG.SVDSQFTHLAWIN.P..EG.LGPLNIPLLA..TR.LSED...LKTD.GI | |
Retrocopy | QVLGISVDSQFTHLAWINNPQREGDLGPLNIPLLANMTRGLSEDCAMLKTDAGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 83 .37 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 172 .54 RPM |
SRP007412_cerebellum | 0 .06 RPM | 75 .68 RPM |
SRP007412_heart | 0 .00 RPM | 69 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .97 RPM |
SRP007412_liver | 0 .00 RPM | 76 .71 RPM |
SRP007412_testis | 0 .00 RPM | 2 .07 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_2356 |