Parental gene:

PRDX2, ENSSSCG00000013736

Aliases:None
Description:peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353]
Organism:Pig (Sus scrofa)
Coordinates:2:66509635..66513280(-)


>ENSSSCG00000013736
ATGGCCTCTGGCAACGCGCACATCGGAAAGCCCGCCCCGGAATTCCAGGCCACTGCCGTGGTGAATGGCGCCTTCAAGGA
GGTGAAGCTTTCTGACTACAAAGGGAAGTACTTGGTCCTCTTTTTCTACCCGCTGGATTTCACCTTTGTGTGCCCCACGG
AGATCATCGCTTTCAGCGATCGAGCTGAGGAGTTCCACCAGCTGGGCTGCGAGGTGCTGGGCGTCTCCGTTGACTCTCAG
TTCACCCACCTGGCTTGGATCAACACCCCACGGAAGGAGGGAGGCTTGGGCCCCCTGAAAATCCCCCTGCTGGCTGATGT
AACCAGAAACTTGTCCCTTGATTATGGTGTGCTGAAGGAAGATGAAGGCATCGCCTACAGGGGCCTTTTTATCATCGATG
GCAAGGGTGTCCTTCGCCAGATCACTGTCAATGATTTGCCTGTGGGACGCTCTGTGGATGAGGCTCTGAGGCTGGTCCAG
GCCTTCCAGTACACAGACGAGCATGGGGAAGTCTGTCCTGCTGGCTGGAAGCCAGGCAGCGACACAATCAAGCCCAACGT
GGATGACAGCAAGGAATATTTCTCCAAACACAACTAG

Library Parental gene expression (RPM)
SRP014902_placenta 186 .22 RPM
SRP014902_testis 208 .49 RPM
SRP018288_heart 133 .90 RPM
SRP018288_kidney 261 .73 RPM
SRP018288_liver 74 .04 RPM
SRP018288_lung 98 .98 RPM
SRP018856_adipose 203 .91 RPM
SRP035408_brain 243 .70 RPM
SRP035408_liver 84 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012307 ortholog_one2many 3 retrogenes
retro_amel_1188, retro_amel_1710, retro_amel_55,
Canis familiaris ENSCAFG00000017163 ortholog_one2one 3 retrogenes
retro_cfam_1603, retro_cfam_1624, retro_cfam_1739,
Ciona intestinalis ENSCING00000003002 ortholog_one2many 1 retrogene
retro_cint_8,
Callithrix jacchus ENSCJAG00000004882 ortholog_one2one 4 retrogenes
retro_cjac_1269, retro_cjac_1795, retro_cjac_2356, retro_cjac_2392,
Dipodomys ordii ENSDORG00000009005 ortholog_one2one 1 retrogene
retro_dord_176,
Felis catus ENSFCAG00000000473 ortholog_one2one 1 retrogene
retro_fcat_1755,
Homo sapiens ENSG00000167815 ortholog_one2one 3 retrogenes
retro_hsap_1184, retro_hsap_3278, retro_hsap_3500,
Gorilla gorilla ENSGGOG00000025089 ortholog_one2many 3 retrogenes
retro_ggor_2366, retro_ggor_2833, retro_ggor_923,
Macaca mulatta ENSMMUG00000005689 ortholog_one2many 2 retrogenes
retro_mmul_1780, retro_mmul_2061,
Monodelphis domestica ENSMODG00000006978 ortholog_one2one 1 retrogene
retro_mdom_1770,
Mustela putorius furo ENSMPUG00000004591 ortholog_one2one 2 retrogenes
retro_mputfur_28, retro_mputfur_660,
Mus musculus ENSMUSG00000005161 ortholog_one2many 2 retrogenes
retro_mmus_2403, retro_mmus_472,
Nomascus leucogenys ENSNLEG00000012800 ortholog_one2one 2 retrogenes
retro_nleu_2110, retro_nleu_2883,
Otolemur garnettii ENSOGAG00000024998 ortholog_one2many 2 retrogenes
retro_ogar_1993, retro_ogar_244,
Pongo abelii ENSPPYG00000009607 ortholog_one2one 3 retrogenes
retro_pabe_2711, retro_pabe_2892, retro_pabe_988,
Pan troglodytes ENSPTRG00000010541 ortholog_one2one 3 retrogenes
retro_ptro_2217, retro_ptro_2372, retro_ptro_812,
Rattus norvegicus ENSRNOG00000003520 ortholog_one2one 2 retrogenes
retro_rnor_2288, retro_rnor_497,
Sorex araneus ENSSARG00000000146 ortholog_one2one 1 retrogene
retro_sara_96,
Sarcophilus harrisii ENSSHAG00000015596 ortholog_one2one 1 retrogene
retro_shar_305,
Sus scrofa ENSSSCG00000003914 within_species_paralog 1 retrogene
retro_sscr_719,
Ictidomys tridecemlineatus ENSSTOG00000025862 ortholog_one2one 1 retrogene
retro_itri_842,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_155 67.39 92.42
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2. retro_sscr_962 80.89 78.79
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Download FASTA sequences of all ENSSSCG00000013736 retrocopies