RetrogeneDB ID: | retro_cint_8 | ||
Retrocopylocation | Organism: | Vase tunicate (Ciona intestinalis) | |
Coordinates: | 10:3972123..3972729(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCING00000006430 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CI-PER-LIKE | ||
Ensembl ID: | ENSCING00000003002 | ||
Aliases: | None | ||
Description: | peroxiredoxin-like [Source:RefSeq peptide;Acc:NP_001027810] |
Percent Identity: | 65.82 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAGKACIQKSAPDFTATAVVNGDFRDISLSEYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVSEFRDIGC |
....KA.I.K.APD...TA.V.G....I.L..YKGKY...FFYPLDFTFVCPTEIIAFSDRV.EF..I.. | |
Retrocopy | LQSTKAQISKPAPDWEGTAIVDGEIKTIKLGDYKGKYLIFFFYPLDFTFVCPTEIIAFSDRVAEFKKINA |
Parental | EVLACSTDSHFSHLAWTNIPRKKGGIGNMKIPLIADKNCAISKDYGVLMEGSGIAFRGLFIIDTMGILRQ |
EV.A.S.DSHF.HLAW.N..R..GG.G...IPL..D....IS.DYGVL.E..G...RGLFIID..GILRQ | |
Retrocopy | EVVAASVDSHFTHLAWLNTHRSEGGLGKLNIPLLSDLTHKISRDYGVLLEDLGHTLRGLFIIDPKGILRQ |
Parental | ITINDLPVGRSVDETLRLVKAFQFTDQHGEVCPAGWKPGDDTIKPDVQDSQKYFSK |
IT.NDLPVGRSVDETLRLV.AFQ.TD.HGEVCPAGW.PG.DTI.PD..D..KYF.K | |
Retrocopy | ITMNDLPVGRSVDETLRLVQAFQHTDEHGEVCPAGWEPGKDTIIPDPKDKLKYFHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |