RetrogeneDB ID: | retro_cjac_1795 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:59163689..59164226(+) | ||
Located in intron of: | ENSCJAG00000009844 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSCJAG00000004882 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 69.78 % |
Parental protein coverage: | 90.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MASGNAHIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAF-ATVPRTSASWE |
M.SG.A...KPAPDFKATA.VDG.....K...YKGKY..LFFYPLDFTF..PTEII.F.AT.PR.S.SW. | |
Retrocopy | MDSGQAQLRKPAPDFKATALVDG-LRQGKAVNYKGKYFILFFYPLDFTFLWPTEIIVF>ATMPRISISWV |
Parental | V-LGVSVDSQFTHLAW-INTPRKEGGLGPLNIPLL-ADVTRRLSEDYGVLKTDEGIAYRGLFVIDGKGVL |
.....S...QFTHL.W.I..PRKEGGLGPL.IP.L..D.T..LSEDYGVLKTDEGIA..GLF.IDG.G.L | |
Retrocopy | MKCWASRWTQFTHLTWIIYNPRKEGGLGPLSIPCL<IDMTGSLSEDYGVLKTDEGIA*QGLFIIDGRGDL |
Parental | RQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGS |
.QITVNDLPV..SVDEAL.LVQAFQYTD.HGEVCP.G.KPGS | |
Retrocopy | CQITVNDLPVVCSVDEAL*LVQAFQYTDKHGEVCPTG*KPGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .60 RPM | 21 .26 RPM |
SRP051959_heart | 0 .63 RPM | 36 .59 RPM |
SRP051959_kidney | 0 .89 RPM | 32 .39 RPM |
SRP051959_liver | 0 .32 RPM | 13 .56 RPM |
SRP051959_lung | 1 .56 RPM | 11 .16 RPM |
SRP051959_lymph_node | 2 .17 RPM | 1 .85 RPM |
SRP051959_skeletal_muscle | 0 .59 RPM | 40 .99 RPM |
SRP051959_spleen | 0 .90 RPM | 12 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3278 |
Pan troglodytes | retro_ptro_2217 |
Pongo abelii | retro_pabe_2711 |