RetrogeneDB ID: | retro_cjac_2392 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:155912909..155913491(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSCJAG00000004882 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 76.8 % |
Parental protein coverage: | 96.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSV |
IGKPAPDFK.TAVVD.AFK.VKLS.YKGKY.VLFFYPLDFTFVCP.EIIAFS..AEDFRKLGCE.L..SV | |
Retrocopy | IGKPAPDFKTTAVVDDAFKDVKLSGYKGKYLVLFFYPLDFTFVCPMEIIAFSSQAEDFRKLGCERLHASV |
Parental | DSQFTHLAWINTPR-KEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFVIDGKGVLRQITVNDL |
DS.F.HLAWINTPR...G.LGPLNIPLLAD.TR.LSE.Y..LKT.EGIAYRGLF.IDGK.VLR.ITV.DL | |
Retrocopy | DSPFIHLAWINTPR*NVGRLGPLNIPLLADLTRCLSEGYSMLKTHEGIAYRGLFIIDGKDVLREITVSDL |
Parental | PVGRSVDEALRLVQAFQYTDEH--GEVCPAGWKPGSDTIKPNVDDSKEYFSKHN |
PVG...D.AL.LVQA.QY..E....EVCP..WK.GSD.IKP..DDSKEYFSKHN | |
Retrocopy | PVGPFTDQALWLVQAIQYMEEPVLHEVCPPSWKTGSDMIKPSMDDSKEYFSKHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 21 .26 RPM |
SRP051959_heart | 0 .21 RPM | 36 .59 RPM |
SRP051959_kidney | 0 .07 RPM | 32 .39 RPM |
SRP051959_liver | 0 .09 RPM | 13 .56 RPM |
SRP051959_lung | 0 .16 RPM | 11 .16 RPM |
SRP051959_lymph_node | 0 .02 RPM | 1 .85 RPM |
SRP051959_skeletal_muscle | 0 .15 RPM | 40 .99 RPM |
SRP051959_spleen | 0 .15 RPM | 12 .40 RPM |