RetrogeneDB ID: | retro_hsap_1184 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:30870283..30870604(+) | ||
Located in intron of: | ENSG00000102781 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000215049 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSG00000167815 | ||
Aliases: | PRDX2, HEL-S-2a, NKEF-B, NKEFB, PRP, PRX2, PRXII, PTX1, TDPX1, TPX1, TSA | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 87.85 % |
Parental protein coverage: | 78.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGC |
MASGNA..GKPAP.FKAT..VDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEI.A.S..AEDFRKLGC | |
Retrocopy | MASGNACMGKPAPNFKATSMVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEITAVSSHAEDFRKLGC |
Parental | EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADV |
EVLG..VDSQFTHLAWIN.PRKEGGLGPLNIPLLA.V | |
Retrocopy | EVLGILVDSQFTHLAWINIPRKEGGLGPLNIPLLANV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 61 .34 RPM |
bodymap2_adrenal | 0 .00 RPM | 72 .20 RPM |
bodymap2_brain | 0 .00 RPM | 101 .12 RPM |
bodymap2_breast | 0 .02 RPM | 135 .78 RPM |
bodymap2_colon | 0 .00 RPM | 64 .45 RPM |
bodymap2_heart | 0 .00 RPM | 129 .69 RPM |
bodymap2_kidney | 0 .00 RPM | 89 .28 RPM |
bodymap2_liver | 0 .00 RPM | 69 .77 RPM |
bodymap2_lung | 0 .00 RPM | 46 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 59 .66 RPM |
bodymap2_ovary | 0 .00 RPM | 103 .79 RPM |
bodymap2_prostate | 0 .00 RPM | 85 .16 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 83 .63 RPM |
bodymap2_testis | 0 .00 RPM | 57 .92 RPM |
bodymap2_thyroid | 0 .00 RPM | 86 .42 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 25 .79 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_32454 | 530 libraries | 551 libraries | 528 libraries | 176 libraries | 44 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_812 |
Gorilla gorilla | retro_ggor_923 |
Pongo abelii | retro_pabe_988 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .08 RPM |