RetrogeneDB ID: | retro_mmul_179 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:21638893..21639163(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000014356 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C4ORF52 | ||
Ensembl ID: | ENSMMUG00000006680 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.38 % |
Parental protein coverage: | 83.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VGSQVSESAGRSAGQGSPGRNAMSRNLRTALIFGGFVSLIGAAFYPIYFRPLMRLEDYKREQAINRAGIV |
VGSQVSESAGRSAGQGS.G.NAMSRNLRTALIFG.F.SLIGAAFYPIYFRPLMRLEDY.REQAINRAGIV | |
Retrocopy | VGSQVSESAGRSAGQGSLGPNAMSRNLRTALIFGSFISLIGAAFYPIYFRPLMRLEDYRREQAINRAGIV |
Parental | QEDVQPPGLKVWSDPFGRK |
QEDVQPPGLKVWSDPFGRK | |
Retrocopy | QEDVQPPGLKVWSDPFGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 5 .71 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .17 RPM |
SRP007412_heart | 0 .00 RPM | 12 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .07 RPM |
SRP007412_liver | 0 .00 RPM | 6 .81 RPM |
SRP007412_testis | 0 .45 RPM | 5 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003897 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004966 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000002680 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017222 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006680 | 1 retrocopy |
retro_mmul_179 ,
|
Nomascus leucogenys | ENSNLEG00000016894 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004810 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015052 | 2 retrocopies |