RetrogeneDB ID: | retro_mmul_713 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214739843:7461..8466(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000007369 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF2S3 | ||
Ensembl ID: | ENSMMUG00000006979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.43 % |
Parental protein coverage: | 71.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVK |
.RHVSFV..PGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVK | |
Retrocopy | IRHVSFVK-PGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVK |
Parental | ESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNK |
ESQAKEQYEQI.AFVQ.TV.EGAPIIPISAQLKYNIEVVCEYIVKKIPVPPR.FTSEPRLIVIRSFDVNK | |
Retrocopy | ESQAKEQYEQIVAFVQATVPEGAPIIPISAQLKYNIEVVCEYIVKKIPVPPREFTSEPRLIVIRSFDVNK |
Parental | PGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGL |
PGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGG. | |
Retrocopy | PGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGF |
Parental | IGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMV |
IGVGTKIDPTLC.ADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGV.TEGDKKAAKVQKLSKNEVLMV | |
Retrocopy | IGVGTKIDPTLCQADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVHTEGDKKAAKVQKLSKNEVLMV |
Parental | NIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRG |
NI.SLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALS.RVEKHWRLIGWGQIRRG | |
Retrocopy | NIVSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSQRVEKHWRLIGWGQIRRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 21 .18 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 29 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .77 RPM |
SRP007412_heart | 0 .00 RPM | 28 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .25 RPM |
SRP007412_liver | 0 .00 RPM | 9 .94 RPM |
SRP007412_testis | 0 .04 RPM | 3 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014337 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018584 | 1 retrocopy | |
Equus caballus | ENSECAG00000017343 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000341 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000011052 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006979 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000007541 | 2 retrocopies | |
Mus musculus | ENSMUSG00000035150 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020194 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002533 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012178 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007144 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012474 | 4 retrocopies |