Parental gene:

ENSSSCG00000012178

Aliases:None
Description:Eukaryotic translation initiation factor 2 subunit 3 [Source:UniProtKB/TrEMBL;Acc:F1SPY4]
Organism:Pig (Sus scrofa)
Coordinates:Y:1277623..1297330(+)


>ENSSSCG00000012178
ATGGCGGCGGGAGAGGCTGGTGTGACCCTAGGACAGCCTCATCTTTCTCGCCAGGATCTCACTACCTTGGATGTTACCAG
GTTGACGCCACTCTCACATGAAGTTATTAGCAGACAAGCCACAATTAATATAGGTACAATTGGTCATGTTGCCCATGGGA
AATCTACTGTTGTAAAAGCTATATCTGGAGTTCATACTGTTAGATTCAAAAATGAACTAGAAAGAAATATTACAATCAAG
CTTGGATATGCTAATGCTAAGATTTACAAACTTGATGATGCAAGTTGTCCTCGGCCAGAATGCTATAGATCTTGTGGAAG
TAGTACACCTGATGAGTTTCCTACAGACATTCCAGGAACCAAAGGGAACTTCAAACTAGTCAGACATGTTTCCTTTGTTG
ACTGTCCTGGTCATGATATTTTGATGGCTACTATGCTGAATGGTGCAGCAGTGATGGATGCAGCTCTTCTGTTAATAGCT
GGTAATGAATCCTGTCCTCAACCTCAAACTTCTGAACACTTGGCTGCCATAGAAATTATGAAGCTGAAACACATATTGAT
TCTACAAAATAAAATTGATTTGGTAAAAGAAAGTCAGGCTAAAGAACAGTATGAACAGATTCTTGCATTTGTACAAGGTA
CAGTAGCAGAAGGAGCGCCTATTATTCCAATTTCTGCTCAGTTGAAATATAATATTGAAGTTGTCTGTGAGTATATTGTA
AAGAAAATTCCAGTACCTCTAAGAGACTTTACTTCAGAACCTCGACTTATTGTTATTAGGTCCTTTGATGTCAACAAACC
TGGCTGTGAGGTTGATGATCTTAAAGGTGGTGTGGCCGGTGGTAGTATTTTAAAAGGAGTATTAAAGGTGGGCCAGGAGA
TAGAAGTCAGACCTGGTATCGTTTCCAAAGATTGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCAAAAATTGTCTCA
CTTTTTGCGGAACACAATGATCTTCAGTATGCTGCTCCAGGGGGTCTTATTGGAGTTGGAACAAAAATTGACCCCACTTT
GTGCCGGGCTGACAGAATGGTGGGACAGGTGCTTGGTGCAGTTGGAGCTTTACCAGAGATCTTCACAGAATTGGAAATTT
CCTATTTCCTACTTAGACGGCTTCTTGGTGTACGTACTGAAGGAGACAAAAAAGCAGCAAAGGTGCAGAAGCTGTCTAAG
AATGAAGTGCTTATGGTGAACATAGGATCCCTCTCAACAGGTGGAAGAGTTAGTGCAGTCAAGGCTGATTTGGGCAAAAT
AGTTCTCACTAATCCTGTGTGCACAGAAGTGGGAGAAAAAATAGCCCTAAGCCGAAGAGTTGAGAAACATTGGCGTTTAA
TTGGTTGGGGTCAGATAAGAAGAGGAGTAACCATCAAGCCAACAGTAGATGATGACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .00 RPM
SRP014902_testis 87 .41 RPM
SRP018288_heart 0 .00 RPM
SRP018288_kidney 0 .00 RPM
SRP018288_liver 0 .00 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .00 RPM
SRP035408_brain 47 .29 RPM
SRP035408_liver 81 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014337 possible_ortholog 1 retrogene
retro_btau_1497,
Dasypus novemcinctus ENSDNOG00000018584 possible_ortholog 1 retrogene
retro_dnov_1454,
Equus caballus ENSECAG00000017343 possible_ortholog 1 retrogene
retro_ecab_810,
Echinops telfairi ENSETEG00000000341 possible_ortholog 4 retrogenes
retro_etel_1061, retro_etel_126, retro_etel_1590, retro_etel_2017,
Loxodonta africana ENSLAFG00000011052 possible_ortholog 1 retrogene
retro_lafr_971,
Macaca mulatta ENSMMUG00000006979 possible_ortholog 4 retrogenes
retro_mmul_1965, retro_mmul_2258, retro_mmul_473, retro_mmul_713,
Monodelphis domestica ENSMODG00000007541 ortholog_one2many 2 retrogenes
retro_mdom_1650, retro_mdom_732,
Mus musculus ENSMUSG00000035150 possible_ortholog 2 retrogenes
retro_mmus_1408, retro_mmus_3433,
Pongo abelii ENSPPYG00000020194 possible_ortholog 1 retrogene
retro_pabe_10,
Pteropus vampyrus ENSPVAG00000002533 possible_ortholog 1 retrogene
retro_pvam_936,
Ictidomys tridecemlineatus ENSSTOG00000007144 possible_ortholog 1 retrogene
retro_itri_582,
Tursiops truncatus ENSTTRG00000012474 possible_ortholog 4 retrogenes
retro_ttru_1080, retro_ttru_1638, retro_ttru_617, retro_ttru_686,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_805 94.10 57.20
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Download FASTA sequences of all ENSSSCG00000012178 retrocopies