RetrogeneDB ID:

retro_mputfur_312

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896903.1:1057525..1058433(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTCH2
Ensembl ID:ENSMPUG00000003852
Aliases:None
Description:mitochondrial carrier 2 [Source:HGNC Symbol;Acc:17587]


Retrocopy-Parental alignment summary:






>retro_mputfur_312
ATGGCAGTCATTGCTAGTCACATGCTCCTGGTCTCCGGTCTCACCTTTGTGTTCCAGACACTCATGTCTATGAAAGTACT
CATCCAGGTAGAAAATGAGCCTCTTCCTCCAACAAAAGGACAAAATATTTTTGGGCAACAAGTATGTCAGCTCCCTGGTC
TGTTTTGTTATGCTCAGCATTTTGTCAGCATTAGTGGGAAACATGGGTTGTTCATAGACTTAACTCCAAAACTATGTTCA
GGAATCCTTGGAATTGTGGTCCATGGTAACATTTTACAGCTTTATTGGGTAGTGTGAGAATGTTGAGGAAATAGGCCCTG
AAAATGTGCAAAAAGAAGCCATATTTTTCTTCAACCAAGTTATCAAGGAGACAAATCAAGAGACGATGGCTTGTTCTGCT
GCTACCCTCATCACACATCCCTTCCACATGATCACTCTGAGATTTGTGGTACAATTCACTGGCAGAGAATCCAAGTACTG
TGGACTTTGTGACTCTGTTGTAACTATGTATCAGGAAGAGGGCATCCTAGGATTTTTGTGGGTCTTATTCTTCACCTCCA
AGGTGACATAATTTCTTTGTGGCTCTGAAACTCACCAGCCTACCTTGACAGTACCTATGCACTGGACAGTGAGGTTTCCA
CCATGTATGAAATGAAGAGTTATTCTGGAGCTGTCATAGGATTTTTTTGCCAATGTTGACCTACCCCTTTGTGCTTATTT
CTAATCTTATGGTTGTCAACAACTGTGGGCTTACTGGTGGATCCCCACCTTACTTCACAATATATACTTCTTGGATAGAT
TGCTGGTGCCTTCTACAAAAAGAGAGAAATATGGGCTGAGAAAATAATTTCTTTTTCCAGAAGGTCCCCTTTGGGAAGAC
TTATTGTTGTGACCTGAGGATGTTAATT

ORF - retro_mputfur_312 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.22 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 2
Number of frameshifts detected: 3


Retrocopy - Parental Gene Alignment:

ParentalMADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFCYAQHIASIDGKRGL
MA..AS..LL.SGLT...Q.LM..KVLIQV..EPLPPT.G.NIFG.QVCQLPGLFCYAQH..SI.GK.GL
RetrocopyMAVIASHMLLVSGLTFVFQTLMSMKVLIQVENEPLPPTKGQNIFGQQVCQLPGLFCYAQHFVSISGKHGL
ParentalFTGLTPRLCSGVLGTVVHGKVLQHYQE-CDKVEDLGSGNSQKEVTPSFDQVIKETTREMMARSAATLITH
F..LTP.LCSG.LG.VVHG..LQ.Y...C..VE..G..N.QKE....F.QVIKET..E.MA.SAATLITH
RetrocopyFIDLTPKLCSGILGIVVHGNILQLYWV>CENVEEIGPENVQKEAIFFFNQVIKETNQETMACSAATLITH
ParentalPFHVITLRSMVQFIGRESKYCGLYDSIVTIYREEGILGF-FAGLIPRLLGDIISLWLCNSLAYLVNTYAL
PFH.ITLR..VQF.GRESKYCGL.DS.VT.Y.EEGILGF.F.GLI..L.GDIISLWL.NS.AYL..TYAL
RetrocopyPFHMITLRFVVQFTGRESKYCGLCDSVVTMYQEEGILGF<FVGLILHLQGDIISLWL*NSPAYLDSTYAL
ParentalDSGVSTMSEMKSYSQAVTGFFAS-MLTYPFVLVSNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGN
DS.VSTM.EMKSYS.AV.GFF...MLTYPFVL.SNLM.VNNCGL.GG.PPY..IYTSWIDCWC.LQKE.N
RetrocopyDSEVSTMYEMKSYSGAVIGFFCQ<MLTYPFVLISNLMVVNNCGLTGGSPPYFTIYTSWIDCWCLLQKERN
ParentalMSRGNSLFFRKVPFGKTYCCDLRMLI
M...N..FF.KVPFGKTYCCDLRMLI
RetrocopyMG*ENNFFFQKVPFGKTYCCDLRMLI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_312 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_312 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 17 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000187421 retrocopy
retro_btau_1321,
Choloepus hoffmanni ENSCHOG000000084731 retrocopy
retro_chof_2162,
Callithrix jacchus ENSCJAG000000202133 retrocopies
retro_cjac_1551, retro_cjac_2003, retro_cjac_3812,
Dasypus novemcinctus ENSDNOG000000012211 retrocopy
retro_dnov_1867,
Homo sapiens ENSG000001099192 retrocopies
retro_hsap_1041, retro_hsap_1690,
Gorilla gorilla ENSGGOG000000082813 retrocopies
retro_ggor_1267, retro_ggor_3083, retro_ggor_822,
Mustela putorius furoENSMPUG00000003852 1 retrocopy
retro_mputfur_312 ,
Mus musculus ENSMUSG000000272821 retrocopy
retro_mmus_2657,
Nomascus leucogenys ENSNLEG000000147042 retrocopies
retro_nleu_1335, retro_nleu_913,
Oryctolagus cuniculus ENSOCUG000000063682 retrocopies
retro_ocun_1197, retro_ocun_983,
Otolemur garnettii ENSOGAG000000116071 retrocopy
retro_ogar_2578,
Pongo abelii ENSPPYG000000032963 retrocopies
retro_pabe_1392, retro_pabe_1894, retro_pabe_872,
Pan troglodytes ENSPTRG000000035732 retrocopies
retro_ptro_1144, retro_ptro_710,
Pteropus vampyrus ENSPVAG000000073481 retrocopy
retro_pvam_954,
Sorex araneus ENSSARG000000013991 retrocopy
retro_sara_705,
Sus scrofa ENSSSCG000000132323 retrocopies
retro_sscr_262, retro_sscr_279, retro_sscr_602,
Tursiops truncatus ENSTTRG000000141692 retrocopies
retro_ttru_1476, retro_ttru_353,


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