Parental gene:

MTCH2, ENSCJAG00000020213

Aliases:None
Description:mitochondrial carrier 2 [Source:HGNC Symbol;Acc:17587]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:110910850..110939677(-)


>ENSCJAG00000020213
ATGGCGGACGCGGCCAGTCAGGTGCTCCTAGGCTCCGGTCTCACCATCCTGTCCCAGCCGCTCATGTACGTGAAAGTGCT
AATCCAGGTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTGTGTCAGCTTCCTGGTC
TCTTTTGTTACGCTCAGCACATTGCCAGTATCGATGGGAGACGTGGGTTGTTCACAGGCTTAACTCCAAGACTGTGTTCG
GGAGTCCTTGGAACTGTGGTCCACGGTAAAGTCTTACAGCATTACCAGGAGAGTGACAAGGGTGAGGAGTTAGGACCTGG
AAATGTACAGAAAGAAGTCTCATCTTCCTTTGACCGCGTTATCAAGGAGACAACTCGAGAGATGATCGCTCGTTCTGCTG
CTACTCTCATCACACATCCCTTCCATGTGATCACTCTCAGATCTATGGTACAATTCATTGGCAGAGAATCCAAGTACTGT
GGACTTTGTGATTCCATAGTAACCATCTATCGGGAAGAGGGCATCCTAGGATTTTTCGCGGGTCTTGTTCCTCGCCTTCT
AGGTGACATCCTTTCTTTGTGGCTGTGTAACTCACTGGCCTACCTCGTCAATACCTATGCACTGGACAGTGGGGTTTCTA
CCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGATTTTTTGCCAGTATGTTGACCTATCCCTTTGTGCTTGTC
TCCAATCTTATGGCTGTCAACAACTGTGGTCTTGCTGGTGGATGCCCTCCTTACTCCCCAATATATACATCATGGATAGA
TTGTTGGTGCATGCTACAAAAAGAGGGGAATATGAGCCGAGGAAATAGCTTGTTTTTCCGGAAGGTCCCCTTTGGGAAGA
CTTACTGTTGTGACCTGAAAATGTTAATTTGA

Library Parental gene expression (RPM)
SRP051959_colon 30 .84 RPM
SRP051959_heart 23 .77 RPM
SRP051959_kidney 42 .07 RPM
SRP051959_liver 29 .52 RPM
SRP051959_lung 16 .12 RPM
SRP051959_lymph_node 22 .62 RPM
SRP051959_skeletal_muscle 35 .73 RPM
SRP051959_spleen 20 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018742 ortholog_one2one 1 retrogene
retro_btau_1321,
Choloepus hoffmanni ENSCHOG00000008473 ortholog_one2one 1 retrogene
retro_chof_2162,
Callithrix jacchus ENSCJAG00000005273 within_species_paralog 2 retrogenes
retro_cjac_2480, retro_cjac_4182,
Dasypus novemcinctus ENSDNOG00000001221 ortholog_one2one 1 retrogene
retro_dnov_1867,
Homo sapiens ENSG00000109919 ortholog_one2one 2 retrogenes
retro_hsap_1041, retro_hsap_1690,
Gorilla gorilla ENSGGOG00000008281 ortholog_one2one 3 retrogenes
retro_ggor_1267, retro_ggor_3083, retro_ggor_822,
Mustela putorius furo ENSMPUG00000003852 ortholog_one2one 1 retrogene
retro_mputfur_312,
Mus musculus ENSMUSG00000027282 ortholog_one2one 1 retrogene
retro_mmus_2657,
Nomascus leucogenys ENSNLEG00000014704 ortholog_one2one 2 retrogenes
retro_nleu_1335, retro_nleu_913,
Oryctolagus cuniculus ENSOCUG00000006368 ortholog_one2one 2 retrogenes
retro_ocun_1197, retro_ocun_983,
Otolemur garnettii ENSOGAG00000011607 ortholog_one2one 1 retrogene
retro_ogar_2578,
Pongo abelii ENSPPYG00000003296 ortholog_one2one 3 retrogenes
retro_pabe_1392, retro_pabe_1894, retro_pabe_872,
Pan troglodytes ENSPTRG00000003573 ortholog_one2one 2 retrogenes
retro_ptro_1144, retro_ptro_710,
Pteropus vampyrus ENSPVAG00000007348 ortholog_one2one 1 retrogene
retro_pvam_954,
Sorex araneus ENSSARG00000001399 ortholog_one2one 1 retrogene
retro_sara_705,
Sus scrofa ENSSSCG00000013232 ortholog_one2one 3 retrogenes
retro_sscr_262, retro_sscr_279, retro_sscr_602,
Tursiops truncatus ENSTTRG00000014169 ortholog_one2one 2 retrogenes
retro_ttru_1476, retro_ttru_353,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1551 63.82 64.36
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2. retro_cjac_2003 62.12 86.47
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3. retro_cjac_3812 69.34 69.64
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Download FASTA sequences of all ENSCJAG00000020213 retrocopies