RetrogeneDB ID:

retro_mputfur_730

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896942.1:2373252..2373820(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAQ
Ensembl ID:ENSMPUG00000013252
Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]


Retrocopy-Parental alignment summary:






>retro_mputfur_730
CTATCCAAGTCATTGCTGGTCCAGAAGGTGAAGCTGGCAGGTCAGGCCAAGCGCTATGAGACCTGGCCACCTGCATGAAT
GCTATGACTGGGCAGGCATCAAGCTGTCCAATGAGGAGCACAGCCTGCTCCCAGTGGCCTACAAGAATATGGTCAGGGGC
CACAGTTTAGCCTGGAAGGTCATCTTGAGCATGAAACAGAAAACCAACACCAACAAGAAGTTGCAGCTGATTAAGGACTA
TTGGGAAAAAGTGGGGTCTGAGCTGAGGTCCATATGTACCACGGTGTTGGAATTGTTGGGTCAGTATATAAGAGCCAATG
CAACTAATCCAGAGAGTAAGGTCTTCTATATGAAACTGAAGGGAAATTACTTCTGGTACCTTGCTGAAGGTGCATGTGGT
GATGACTGAAAACAAATGATAGATAGTTCCCAGGGAGCTTACCAAGAGGCTTTTGATATAAGCAAGAAAGAGATGCAACC
CACACACCCAACTTGCTTGGGGCCAGCTCTTAACTCTTCTGTATTTTAAGAAGAGAGCCTTACTAACCCAGAGCTTGCTG
CACACCTG

ORF - retro_mputfur_730 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.98 %
Parental protein coverage: 77.96 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMEKTELIQKAKLAEQAERYD-DMATCMKAVTEQ-GAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQK
..K..L.QK.KLA.QA.RY..D.ATCM.A.T.Q.G..LSNEE..LL.VAYKN.V.G...AW.VI.S..QK
RetrocopyLSKSLLVQKVKLAGQAKRYE<DLATCMNAMTGQ<GIKLSNEEHSLLPVAYKNMVRGHSLAWKVILSMKQK
ParentalTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDR
T.T..KKLQLIKDY.EKV.SELRSICTTVLELL..Y..ANATNPESKVFY.K.KG.YF.YLAE.ACGDD.
RetrocopyTNTN-KKLQLIKDYWEKVGSELRSICTTVLELLGQYIRANATNPESKVFYMKLKGNYFWYLAEGACGDD*
ParentalKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTL
KQ.ID.SQGAYQEAFDISKKEMQPTHP..LG.ALN.SVF..E.L.NPELA..L
RetrocopyKQMIDSSQGAYQEAFDISKKEMQPTHPTCLGPALNSSVF*EESLTNPELAAHL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_730 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_730 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000021082 retrocopies
Callithrix jacchus ENSCJAG000000063942 retrocopies
Echinops telfairi ENSETEG000000153594 retrocopies
Homo sapiens ENSG000001343082 retrocopies
Gorilla gorilla ENSGGOG000000015691 retrocopy
Myotis lucifugus ENSMLUG000000053831 retrocopy
Monodelphis domestica ENSMODG000000147401 retrocopy
Mustela putorius furoENSMPUG00000013252 2 retrocopies
retro_mputfur_1132, retro_mputfur_730 ,
Mustela putorius furoENSMPUG000000151584 retrocopies
Nomascus leucogenys ENSNLEG000000135343 retrocopies
Oryctolagus cuniculus ENSOCUG000000104821 retrocopy
Pongo abelii ENSPPYG000000126634 retrocopies
Pan troglodytes ENSPTRG000000116412 retrocopies
Pteropus vampyrus ENSPVAG000000053341 retrocopy
Rattus norvegicus ENSRNOG000000081045 retrocopies
Sorex araneus ENSSARG000000124764 retrocopies



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