RetrogeneDB ID: retro_mputfur_730

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896942.1:2373252..2373820(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YWHAQ
• Ensembl ID: ENSMPUG00000013252
• Aliases: None
• Description: tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]

Sequence

>retro_mputfur_730
CTATCCAAGTCATTGCTGGTCCAGAAGGTGAAGCTGGCAGGTCAGGCCAAGCGCTATGAGACCTGGCCACCTGCATGAAT
GCTATGACTGGGCAGGCATCAAGCTGTCCAATGAGGAGCACAGCCTGCTCCCAGTGGCCTACAAGAATATGGTCAGGGGC
CACAGTTTAGCCTGGAAGGTCATCTTGAGCATGAAACAGAAAACCAACACCAACAAGAAGTTGCAGCTGATTAAGGACTA
TTGGGAAAAAGTGGGGTCTGAGCTGAGGTCCATATGTACCACGGTGTTGGAATTGTTGGGTCAGTATATAAGAGCCAATG
CAACTAATCCAGAGAGTAAGGTCTTCTATATGAAACTGAAGGGAAATTACTTCTGGTACCTTGCTGAAGGTGCATGTGGT
GATGACTGAAAACAAATGATAGATAGTTCCCAGGGAGCTTACCAAGAGGCTTTTGATATAAGCAAGAAAGAGATGCAACC
CACACACCCAACTTGCTTGGGGCCAGCTCTTAACTCTTCTGTATTTTAAGAAGAGAGCCTTACTAACCCAGAGCTTGCTG
CACACCTG

Alignment

ORF - retro_mputfur_730 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.98 %
• Parental protein coverage: 77.96 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MEKTELIQKAKLAEQAERYD-DMATCMKAVTEQ-GAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQK
          ..K..L.QK.KLA.QA.RY..D.ATCM.A.T.Q.G..LSNEE..LL.VAYKN.V.G...AW.VI.S..QK
Retrocopy LSKSLLVQKVKLAGQAKRYE<DLATCMNAMTGQ<GIKLSNEEHSLLPVAYKNMVRGHSLAWKVILSMKQK

Parental  TDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDR
          T.T..KKLQLIKDY.EKV.SELRSICTTVLELL..Y..ANATNPESKVFY.K.KG.YF.YLAE.ACGDD.
Retrocopy TNTN-KKLQLIKDYWEKVGSELRSICTTVLELLGQYIRANATNPESKVFYMKLKGNYFWYLAEGACGDD*

Parental  KQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTL
          KQ.ID.SQGAYQEAFDISKKEMQPTHP..LG.ALN.SVF..E.L.NPELA..L
Retrocopy KQMIDSSQGAYQEAFDISKKEMQPTHPTCLGPALNSSVF*EESLTNPELAAHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_730 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_730 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 39 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002108	2 retrocopies	retro_btau_1180, retro_btau_86,
Callithrix jacchus	ENSCJAG00000006394	2 retrocopies	retro_cjac_2197, retro_cjac_3127,
Echinops telfairi	ENSETEG00000015359	4 retrocopies	retro_etel_1027, retro_etel_1048, retro_etel_235, retro_etel_65,
Homo sapiens	ENSG00000134308	2 retrocopies	retro_hsap_3004, retro_hsap_8,
Gorilla gorilla	ENSGGOG00000001569	1 retrocopy	retro_ggor_2081,
Myotis lucifugus	ENSMLUG00000005383	1 retrocopy	retro_mluc_1817,
Monodelphis domestica	ENSMODG00000014740	1 retrocopy	retro_mdom_1339,
Mustela putorius furo	ENSMPUG00000013252	2 retrocopies	retro_mputfur_1132, retro_mputfur_730 ,
Mustela putorius furo	ENSMPUG00000015158	4 retrocopies	retro_mputfur_1000, retro_mputfur_239, retro_mputfur_7, retro_mputfur_864,
Nomascus leucogenys	ENSNLEG00000013534	3 retrocopies	retro_nleu_2543, retro_nleu_750, retro_nleu_869,
Oryctolagus cuniculus	ENSOCUG00000010482	1 retrocopy	retro_ocun_1463,
Pongo abelii	ENSPPYG00000012663	4 retrocopies	retro_pabe_1165, retro_pabe_2490, retro_pabe_3391, retro_pabe_3511,
Pan troglodytes	ENSPTRG00000011641	2 retrocopies	retro_ptro_2032, retro_ptro_3,
Pteropus vampyrus	ENSPVAG00000005334	1 retrocopy	retro_pvam_983,
Rattus norvegicus	ENSRNOG00000008104	5 retrocopies	retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,
Sorex araneus	ENSSARG00000012476	4 retrocopies	retro_sara_1, retro_sara_162, retro_sara_179, retro_sara_23,