Parental gene:

YWHAQ, ENSPTRG00000011641

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:9676774..9724961(-)


>ENSPTRG00000011641
ATGGAGAAGACTGAGCTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAA
GGCAGTGACCGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCCGTGGCCTACAAGAACGTGGTCGGGG
GCCGCAGGTCCGCCTGGAGGGTCATCTCTAGCATCGAGCAGAAGACCGACACCTCCGACAAGAAGTTGCAGCTGATTAAG
GACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGC
CAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCAT
GTGGTGATGATCGAAAACAAACGATAGATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATG
CAACCCACACACCCAATCCGCCTGGGGCTTGCTCTTAACTTTTCTGTATTTTACTATGAGATTCTTAATAACCCAGAGCT
TGCCTGCACGCTGGCTAAAACGGCTTTTGATGAGGCCATTGCTGAACTTGATACACTGAATGAAGACTCATACAAAGACA
GCACCCTCATCATGCAGTTGCTTAGAGACAACCTAACACTTTGGACATCAGACAGTGCAGGAGAAGAATGTGATGCGGCA
GAAGGGGCTGAAAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 181 .50 RPM
SRP007412_cerebellum 164 .19 RPM
SRP007412_heart 61 .38 RPM
SRP007412_kidney 105 .78 RPM
SRP007412_liver 49 .92 RPM
SRP007412_testis 224 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002108 ortholog_one2one 2 retrogenes
retro_btau_1180, retro_btau_86,
Callithrix jacchus ENSCJAG00000006394 ortholog_one2one 2 retrogenes
retro_cjac_2197, retro_cjac_3127,
Echinops telfairi ENSETEG00000015359 ortholog_one2one 4 retrogenes
retro_etel_1027, retro_etel_1048, retro_etel_235, retro_etel_65,
Homo sapiens ENSG00000134308 ortholog_one2one 2 retrogenes
retro_hsap_3004, retro_hsap_8,
Gorilla gorilla ENSGGOG00000001569 ortholog_one2one 1 retrogene
retro_ggor_2081,
Myotis lucifugus ENSMLUG00000005383 ortholog_one2one 1 retrogene
retro_mluc_1817,
Monodelphis domestica ENSMODG00000014740 ortholog_one2one 1 retrogene
retro_mdom_1339,
Mustela putorius furo ENSMPUG00000013252 ortholog_one2one 2 retrogenes
retro_mputfur_1132, retro_mputfur_730,
Oryctolagus cuniculus ENSOCUG00000010482 ortholog_one2one 1 retrogene
retro_ocun_1463,
Pongo abelii ENSPPYG00000012663 ortholog_one2one 4 retrogenes
retro_pabe_1165, retro_pabe_2490, retro_pabe_3391, retro_pabe_3511,
Pan troglodytes ENSPTRG00000008521 other_paralog 5 retrogenes
retro_ptro_1697, retro_ptro_2538, retro_ptro_2624, retro_ptro_2626, retro_ptro_2993,
Pan troglodytes ENSPTRG00000013529 within_species_paralog 12 retrogenes
retro_ptro_1010, retro_ptro_1686, retro_ptro_2390, retro_ptro_2828, retro_ptro_2887, retro_ptro_3125, retro_ptro_3201, retro_ptro_3225, retro_ptro_412, retro_ptro_453, retro_ptro_594, retro_ptro_965,
Pteropus vampyrus ENSPVAG00000005334 ortholog_one2one 1 retrogene
retro_pvam_983,
Rattus norvegicus ENSRNOG00000008104 possible_ortholog 5 retrogenes
retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,
Sorex araneus ENSSARG00000012476 ortholog_one2one 4 retrogenes
retro_sara_1, retro_sara_162, retro_sara_179, retro_sara_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3 71.85 96.33
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2. retro_ptro_2032 86.63 82.04
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Download FASTA sequences of all ENSPTRG00000011641 retrocopies